Literature DB >> 19048203

Nucleic acids-based therapeutics in the battle against pathogenic viruses.

Joost Haasnoot1, Ben Berkhout.   

Abstract

For almost three decades, researchers have studied the possibility to use nucleic acids as antiviral therapeutics. In theory, compounds such as antisense oligonucleotides, ribozymes, DNAzymes, and aptamers can be designed to trigger the sequence-specific inhibition of particular mRNA transcripts, including viral genomes. However, difficulties with their efficiency, off-target effects, toxicity, delivery, and stability halted the development of nucleic acid-based therapeutics that can be used in the clinic. So far, only a single antisense drug, Vitravene for the treatment of CMV-induced retinitis in AIDS patients, has made it to the clinic. Since the discovery of RNA interference (RNAi), there is a renewed interest in the development of nucleic acid-based therapeutics. Antiviral RNAi approaches are highly effective in vitro and in animal models and are currently being tested in clinical trials. Here we give an overview of antiviral nucleic acid-based therapeutics. We focus on antisense and RNAi-based compounds that have been shown to be effective in animal model systems.

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Year:  2009        PMID: 19048203      PMCID: PMC7119910          DOI: 10.1007/978-3-540-79086-0_9

Source DB:  PubMed          Journal:  Handb Exp Pharmacol        ISSN: 0171-2004


  128 in total

1.  Enhanced gene silencing of HIV-1 specific siRNA using microRNA designed hairpins.

Authors:  Daniel Boden; Oliver Pusch; Rebecca Silbermann; Fred Lee; Lynne Tucker; Bharat Ramratnam
Journal:  Nucleic Acids Res       Date:  2004-02-13       Impact factor: 16.971

Review 2.  Induction and suppression of RNA silencing: insights from viral infections.

Authors:  Olivier Voinnet
Journal:  Nat Rev Genet       Date:  2005-03       Impact factor: 53.242

3.  Bent pseudoknots and novel RNA inhibitors of type 1 human immunodeficiency virus (HIV-1) reverse transcriptase.

Authors:  D H Burke; L Scates; K Andrews; L Gold
Journal:  J Mol Biol       Date:  1996-12-13       Impact factor: 5.469

4.  Inhibition of infectious human immunodeficiency virus type 1 virions via lentiviral vector encoded short antisense RNAs.

Authors:  Shuo Gu; Jianfei Ji; James D Kim; Jiing-Kuan Yee; John J Rossi
Journal:  Oligonucleotides       Date:  2006

5.  A randomized controlled clinical trial of intravitreous fomivirsen for treatment of newly diagnosed peripheral cytomegalovirus retinitis in patients with AIDS.

Authors: 
Journal:  Am J Ophthalmol       Date:  2002-04       Impact factor: 5.258

6.  Effective suppression of human immunodeficiency virus type 1 through a combination of short- or long-hairpin RNAs targeting essential sequences for retroviral integration.

Authors:  Hironori Nishitsuji; Michinori Kohara; Mari Kannagi; Takao Masuda
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

7.  Human immunodeficiency virus type 1 escape from RNA interference.

Authors:  Daniel Boden; Oliver Pusch; Frederick Lee; Lynne Tucker; Bharat Ramratnam
Journal:  J Virol       Date:  2003-11       Impact factor: 5.103

8.  The inhibitory efficacy of RNA POL III-expressed long hairpin RNAs targeted to untranslated regions of the HIV-1 5' long terminal repeat.

Authors:  Samantha Barichievy; Sheena Saayman; Karin J von Eije; Kevin V Morris; Patrick Arbuthnot; Marc S Weinberg
Journal:  Oligonucleotides       Date:  2007

9.  Modulation of HIV-1 replication by RNA interference.

Authors:  Jean-Marc Jacque; Karine Triques; Mario Stevenson
Journal:  Nature       Date:  2002-06-26       Impact factor: 69.504

10.  Silencing SARS-CoV Spike protein expression in cultured cells by RNA interference.

Authors:  Yuanjiang Zhang; Tieshi Li; Ling Fu; Changming Yu; Yinghua Li; Xialian Xu; Yinyin Wang; Hongxiu Ning; Shuping Zhang; Wei Chen; Lorne A Babiuk; Zhijie Chang
Journal:  FEBS Lett       Date:  2004-02-27       Impact factor: 4.124

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  17 in total

Review 1.  RNA-based therapeutics: current progress and future prospects.

Authors:  John C Burnett; John J Rossi
Journal:  Chem Biol       Date:  2012-01-27

Review 2.  Selection of RNAi-based inhibitors for anti-HIV gene therapy.

Authors:  Stefanie A Knoepfel; Mireille Centlivre; Ying Poi Liu; Fatima Boutimah; Ben Berkhout
Journal:  World J Virol       Date:  2012-06-12

3.  Inhibition of HIV-1 by a Lentiviral Vector with a Novel Tat-Inducible Expression System and a Specific Tropism to the Target Cells.

Authors:  Touraj Farazmandfar; Mohammad Reza Haghshenas; Majid Shahbazi
Journal:  Hum Gene Ther       Date:  2015-08-06       Impact factor: 5.695

4.  Combinatorial CRISPR-Cas9 and RNA Interference Attack on HIV-1 DNA and RNA Can Lead to Cross-Resistance.

Authors:  Na Zhao; Gang Wang; Atze T Das; Ben Berkhout
Journal:  Antimicrob Agents Chemother       Date:  2017-11-22       Impact factor: 5.191

5.  Gene therapy for dyslipidemia: a review of gene replacement and gene inhibition strategies.

Authors:  Sadik H Kassim; James M Wilson; Daniel J Rader
Journal:  Clin Lipidol       Date:  2010-06

6.  Inhibition of dengue virus infections in cell cultures and in AG129 mice by a small interfering RNA targeting a highly conserved sequence.

Authors:  David A Stein; Stuart T Perry; Michael D Buck; Christopher S Oehmen; Matthew A Fischer; Elizabeth Poore; Jessica L Smith; Alissa M Lancaster; Alec J Hirsch; Mark K Slifka; Jay A Nelson; Sujan Shresta; Klaus Früh
Journal:  J Virol       Date:  2011-07-27       Impact factor: 5.103

7.  A recombinant adenoviral vector with a specific tropism to CD4-positive cells: a new tool for HIV-1 inhibition.

Authors:  Abtin Behmardi; Touraj Farazmandfar
Journal:  Drug Deliv Transl Res       Date:  2022-01-31       Impact factor: 5.671

8.  Novel viral vectors utilizing intron splice-switching to activate genome rescue, expression and replication in targeted cells.

Authors:  Liane Viru; Gregory Heller; Taavi Lehto; Kalle Pärn; Samir El Andaloussi; Ülo Langel; Andres Merits
Journal:  Virol J       Date:  2011-05-19       Impact factor: 4.099

9.  VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA.

Authors:  Nishant Thakur; Abid Qureshi; Manoj Kumar
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

10.  Aptamer-based therapeutics: new approaches to combat human viral diseases.

Authors:  Ka-To Shum; Jiehua Zhou; John J Rossi
Journal:  Pharmaceuticals (Basel)       Date:  2013-11-25
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