Literature DB >> 19045902

Real-time processing for Fourier domain optical coherence tomography using a field programmable gate array.

Teoman E Ustun1, Nicusor V Iftimia, R Daniel Ferguson, Daniel X Hammer.   

Abstract

Real-time display of processed Fourier domain optical coherence tomography (FDOCT) images is important for applications that require instant feedback of image information, for example, systems developed for rapid screening or image-guided surgery. However, the computational requirements for high-speed FDOCT image processing usually exceeds the capabilities of most computers and therefore display rates rarely match acquisition rates for most devices. We have designed and developed an image processing system, including hardware based upon a field programmable gated array, firmware, and software that enables real-time display of processed images at rapid line rates. The system was designed to be extremely flexible and inserted in-line between any FDOCT detector and any Camera Link frame grabber. Two versions were developed for spectrometer-based and swept source-based FDOCT systems, the latter having an additional custom high-speed digitizer on the front end but using all the capabilities and features of the former. The system was tested in humans and monkeys using an adaptive optics retinal imager, in zebrafish using a dual-beam Doppler instrument, and in human tissue using a swept source microscope. A display frame rate of 27 fps for fully processed FDOCT images (1024 axial pixels x 512 lateral A-scans) was achieved in the spectrometer-based systems.

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Mesh:

Year:  2008        PMID: 19045902      PMCID: PMC2678783          DOI: 10.1063/1.3005996

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  22 in total

1.  In vivo human retinal imaging by Fourier domain optical coherence tomography.

Authors:  Maciej Wojtkowski; Rainer Leitgeb; Andrzej Kowalczyk; Tomasz Bajraszewski; Adolf F Fercher
Journal:  J Biomed Opt       Date:  2002-07       Impact factor: 3.170

2.  Buffered Fourier domain mode locking: Unidirectional swept laser sources for optical coherence tomography imaging at 370,000 lines/s.

Authors:  Robert Huber; Desmond C Adler; James G Fujimoto
Journal:  Opt Lett       Date:  2006-10-15       Impact factor: 3.776

3.  Foveal fine structure in retinopathy of prematurity: an adaptive optics Fourier domain optical coherence tomography study.

Authors:  Daniel X Hammer; Nicusor V Iftimia; R Daniel Ferguson; Chad E Bigelow; Teoman E Ustun; Amber M Barnaby; Anne B Fulton
Journal:  Invest Ophthalmol Vis Sci       Date:  2008-01-25       Impact factor: 4.799

4.  Performance of fourier domain vs. time domain optical coherence tomography.

Authors:  R Leitgeb; C Hitzenberger; Adolf Fercher
Journal:  Opt Express       Date:  2003-04-21       Impact factor: 3.894

5.  Ultrahigh-resolution high-speed retinal imaging using spectral-domain optical coherence tomography.

Authors:  Barry Cense; Nader Nassif; Teresa Chen; Mark Pierce; Seok-Hyun Yun; B Park; Brett Bouma; Guillermo Tearney; Johannes de Boer
Journal:  Opt Express       Date:  2004-05-31       Impact factor: 3.894

6.  Optical coherence tomography.

Authors:  D Huang; E A Swanson; C P Lin; J S Schuman; W G Stinson; W Chang; M R Hee; T Flotte; K Gregory; C A Puliafito
Journal:  Science       Date:  1991-11-22       Impact factor: 47.728

7.  Autocalibration of spectral-domain optical coherence tomography spectrometers for in vivo quantitative retinal nerve fiber layer birefringence determination.

Authors:  Mircea Mujat; B Hyle Park; Barry Cense; Teresa C Chen; Johannes F de Boer
Journal:  J Biomed Opt       Date:  2007 Jul-Aug       Impact factor: 3.170

8.  Quantification of macrophage content in atherosclerotic plaques by optical coherence tomography.

Authors:  Guillermo J Tearney; Hiroshi Yabushita; Stuart L Houser; H Thomas Aretz; Ik-Kyung Jang; Kelly H Schlendorf; Christopher R Kauffman; Milen Shishkov; Elkan F Halpern; Brett E Bouma
Journal:  Circulation       Date:  2003-01-07       Impact factor: 29.690

9.  Dual-beam Fourier domain optical Doppler tomography of zebrafish.

Authors:  Nicusor V Iftimia; Daniel X Hammer; R D Ferguson; Mircea Mujat; Danthu Vu; Anthony A Ferrante
Journal:  Opt Express       Date:  2008-09-01       Impact factor: 3.894

10.  Compact multimodal adaptive-optics spectral-domain optical coherence tomography instrument for retinal imaging.

Authors:  Chad E Bigelow; Nicusor V Iftimia; R Daniel Ferguson; Teoman E Ustun; Benjamin Bloom; Daniel X Hammer
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-05       Impact factor: 2.129

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  19 in total

1.  Combined reflectance confocal microscopy-optical coherence tomography for delineation of basal cell carcinoma margins: an ex vivo study.

Authors:  Nicusor Iftimia; Gary Peterson; Ernest W Chang; Gopi Maguluri; William Fox; Milind Rajadhyaksha
Journal:  J Biomed Opt       Date:  2016-01       Impact factor: 3.170

2.  Spectral-domain low coherence interferometry/optical coherence tomography system for fine needle breast biopsy guidance.

Authors:  N V Iftimia; M Mujat; T Ustun; R D Ferguson; V Danthu; D X Hammer
Journal:  Rev Sci Instrum       Date:  2009-02       Impact factor: 1.523

3.  Continuous real-time photoacoustic demodulation via field programmable gate array for dynamic imaging of zebrafish cardiac cycle.

Authors:  Scott P Mattison; Ryan L Shelton; Ryan T Maxson; Brian E Applegate
Journal:  Biomed Opt Express       Date:  2013-07-29       Impact factor: 3.732

4.  Automated algorithm for breast tissue differentiation in optical coherence tomography.

Authors:  Mircea Mujat; R Daniel Ferguson; Daniel X Hammer; Christopher Gittins; Nicusor Iftimia
Journal:  J Biomed Opt       Date:  2009 May-Jun       Impact factor: 3.170

5.  Imaging the eye fundus with real-time en-face spectral domain optical coherence tomography.

Authors:  Adrian Bradu; Adrian Gh Podoleanu
Journal:  Biomed Opt Express       Date:  2014-03-19       Impact factor: 3.732

Review 6.  High-speed OCT light sources and systems [Invited].

Authors:  Thomas Klein; Robert Huber
Journal:  Biomed Opt Express       Date:  2017-01-13       Impact factor: 3.732

7.  Optimization for Axial Resolution, Depth Range, and Sensitivity of Spectral Domain Optical Coherence Tomography at 1.3 µm.

Authors:  Sang-Won Lee; Hyun-Woo Jeong; Beop-Min Kim; Yeh-Chan Ahn; Woonggyu Jung; Zhongping Chen
Journal:  J Korean Phys Soc       Date:  2009-12-12       Impact factor: 0.649

8.  Real-time polarization-sensitive optical coherence tomography data processing with parallel computing.

Authors:  Gangjun Liu; Jun Zhang; Lingfeng Yu; Tuqiang Xie; Zhongping Chen
Journal:  Appl Opt       Date:  2009-11-10       Impact factor: 1.980

9.  High resolution multimodal clinical ophthalmic imaging system.

Authors:  Mircea Mujat; R Daniel Ferguson; Ankit H Patel; Nicusor Iftimia; Niyom Lue; Daniel X Hammer
Journal:  Opt Express       Date:  2010-05-24       Impact factor: 3.894

10.  Spectral domain optical coherence tomography of multi-MHz A-scan rates at 1310 nm range and real-time 4D-display up to 41 volumes/second.

Authors:  Dong-Hak Choi; Hideaki Hiro-Oka; Kimiya Shimizu; Kohji Ohbayashi
Journal:  Biomed Opt Express       Date:  2012-11-01       Impact factor: 3.732

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