Literature DB >> 19041391

Genomics made easier: an introductory tutorial to genome datamining.

Peter Schattner1.   

Abstract

Integrated genome databases--such as the UCSC, Ensembl and NCBI MapViewer databases--and their associated data querying and visualization interfaces (e.g. the genome browsers) have transformed the way that molecular biologists, geneticists and bioinformaticists analyze genomic data. Nevertheless, because of the complexity of these tools, many researchers take advantage of only a fraction of their capabilities. In this tutorial, using examples from medical genetics and alternative splicing, I describe some of the biological questions that can be addressed with these techniques. I also show why doing so typically is more effective than using alternative methods and indicate some of the resources available for learning more about the advanced capabilities of these powerful tools.

Mesh:

Year:  2008        PMID: 19041391     DOI: 10.1016/j.ygeno.2008.10.009

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  5 in total

Review 1.  Materiomics: biological protein materials, from nano to macro.

Authors:  Steven Cranford; Markus J Buehler
Journal:  Nanotechnol Sci Appl       Date:  2010-11-12

2.  CompaGB: An open framework for genome browsers comparison.

Authors:  Thomas Lacroix; Valentin Loux; Annie Gendrault; Jean-François Gibrat; Hélène Chiapello
Journal:  BMC Res Notes       Date:  2011-05-04

3.  Identification of sequences common to more than one therapeutic target to treat complex diseases: simulating the high variance in sequence interactivity evolved to modulate robust phenotypes.

Authors:  Miguel Angel Varela
Journal:  BMC Genomics       Date:  2015-07-18       Impact factor: 3.969

4.  An Approach for Cardiac Coronary Detection of Heart Signal Based on Harris Hawks Optimization and Multichannel Deep Convolutional Learning.

Authors:  Haedar Alsafi; Jorge Munilla; Javad Rahebi
Journal:  Comput Intell Neurosci       Date:  2022-07-30

5.  Expression and characterization of thermostable glycogen branching enzyme from Geobacillus mahadia Geo-05.

Authors:  Nur Syazwani Mohtar; Mohd Basyaruddin Abdul Rahman; Raja Noor Zaliha Raja Abd Rahman; Thean Chor Leow; Abu Bakar Salleh; Mohd Noor Mat Isa
Journal:  PeerJ       Date:  2016-12-06       Impact factor: 2.984

  5 in total

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