Literature DB >> 1904100

On the maximum likelihood method in molecular phylogenetics.

M Hasegawa, H Kishino, N Saitou.   

Abstract

The efficiency of obtaining the correct tree by the maximum likelihood method (Felsenstein 1981) for inferring trees from DNA sequence data was compared with trees obtained by distance methods. It was shown that the maximum likelihood method is superior to distance methods in the efficiency particularly when the evolutionary rate differs among lineages.

Mesh：

Year:  1991        PMID： 1904100     DOI： 10.1007/bf02101285

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  5 in total

1.  Robustness of maximum likelihood tree estimation against different patterns of base substitutions.

Authors:  K Fukami-Kobayashi; Y Tateno
Journal:  J Mol Evol       Date:  1991-01       Impact factor: 2.395

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree.

Authors:  J Sourdis; M Nei
Journal:  Mol Biol Evol       Date:  1988-05       Impact factor: 16.240

4.  Property and efficiency of the maximum likelihood method for molecular phylogeny.

Authors:  N Saitou
Journal:  J Mol Evol       Date:  1988       Impact factor: 2.395

5.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395
  5 in total
  64 in total

1.  A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.

Authors:  Kira S Makarova; L Aravind; Nick V Grishin; Igor B Rogozin; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

2.  Mitochondrial-type hsp70 genes of the amitochondriate protists, Giardia intestinalis, Entamoeba histolytica and two microsporidians.

Authors:  Nobuko Arisue; Lidya B Sánchez; Louis M Weiss; Miklós Müller; Tetsuo Hashimoto
Journal:  Parasitol Int       Date:  2002-03       Impact factor: 2.230

3.  Evolution of the family of intracellular lipid binding proteins in vertebrates.

Authors:  Frank G Schaap; Ger J van der Vusse; Jan F C Glatz
Journal:  Mol Cell Biochem       Date:  2002-10       Impact factor: 3.396

4.  Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants.

Authors:  B S Gaut; S V Muse; W D Clark; M T Clegg
Journal:  J Mol Evol       Date:  1992-10       Impact factor: 2.395

5.  Comparative analysis of apicomplexa and genomic diversity in eukaryotes.

Authors:  Thomas J Templeton; Lakshminarayan M Iyer; Vivek Anantharaman; Shinichiro Enomoto; Juan E Abrahante; G M Subramanian; Stephen L Hoffman; Mitchell S Abrahamsen; L Aravind
Journal:  Genome Res       Date:  2004-09       Impact factor: 9.043

6.  The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.

Authors:  Nicholas R Thomson; Corin Yeats; Kenneth Bell; Matthew T G Holden; Stephen D Bentley; Morag Livingstone; Ana M Cerdeño-Tárraga; Barbara Harris; Jon Doggett; Doug Ormond; Karen Mungall; Kay Clarke; Theresa Feltwell; Zahra Hance; Mandy Sanders; Michael A Quail; Claire Price; Bart G Barrell; Julian Parkhill; David Longbottom
Journal:  Genome Res       Date:  2005-04-18       Impact factor: 9.043

7.  Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain.

Authors:  P Cammarano; P Palm; R Creti; E Ceccarelli; A M Sanangelantoni; O Tiboni
Journal:  J Mol Evol       Date:  1992-05       Impact factor: 2.395

8.  Dictyostelium discoideum mitochondrial DNA encodes a NADH:ubiquinone oxidoreductase subunit which is nuclear encoded in other eukaryotes.

Authors:  R A Cole; M B Slade; K L Williams
Journal:  J Mol Evol       Date:  1995-06       Impact factor: 2.395

9.  Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: rapid evolution in warm-blooded vertebrates.

Authors:  J Adachi; Y Cao; M Hasegawa
Journal:  J Mol Evol       Date:  1993-03       Impact factor: 2.395

10.  PCA and clustering reveal alternate mtDNA phylogeny of N and M clades.

Authors:  G Alexe; R Vijaya Satya; M Seiler; D Platt; T Bhanot; S Hui; M Tanaka; A J Levine; G Bhanot
Journal:  J Mol Evol       Date:  2008-10-15       Impact factor: 2.395
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