Literature DB >> 19033210

A systems-based framework for understanding complex metabolic and cardiovascular disorders.

Sulin Wu1, Aldons J Lusis, Thomas A Drake.   

Abstract

Common forms of metabolic and cardiovascular diseases involve the interplay of numerous genes as well as important environmental factors. Traditional biochemical and genetic approaches generally attempt to dissect these diseases one gene at a time, for example, by analysis of Mendelian forms or genetically engineered experimental organisms. But, it is also important to understand how the genes interact with each other and the environment, and how these interactions change in disease states. Technological advances, such as the development of expression arrays that allow quantification of all transcript levels in a cell or tissue, have made it feasible to globally monitor molecular phenotypes that underlie disease states. By applying statistical methods, relationships between DNA variation, gene expression patterns, and diseases can be modeled.

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Year:  2008        PMID: 19033210      PMCID: PMC2674684          DOI: 10.1194/jlr.R800067-JLR200

Source DB:  PubMed          Journal:  J Lipid Res        ISSN: 0022-2275            Impact factor:   5.922


  43 in total

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Review 2.  From signatures to models: understanding cancer using microarrays.

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3.  An integrative genomics approach to infer causal associations between gene expression and disease.

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Journal:  Nat Genet       Date:  2005-06-19       Impact factor: 38.330

4.  Identification of inflammatory gene modules based on variations of human endothelial cell responses to oxidized lipids.

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-15       Impact factor: 11.205

5.  Distribution of node characteristics in complex networks.

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6.  A genome-wide association study of global gene expression.

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Journal:  Nat Genet       Date:  2007-09-16       Impact factor: 38.330

7.  Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.

Authors:  Aravind Subramanian; Pablo Tamayo; Vamsi K Mootha; Sayan Mukherjee; Benjamin L Ebert; Michael A Gillette; Amanda Paulovich; Scott L Pomeroy; Todd R Golub; Eric S Lander; Jill P Mesirov
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-30       Impact factor: 11.205

Review 8.  Genetic and genomic insights into the molecular basis of atherosclerosis.

Authors:  Yaoyu Chen; Jarod Rollins; Beverly Paigen; Xiaosong Wang
Journal:  Cell Metab       Date:  2007-09       Impact factor: 27.287

Review 9.  Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems.

Authors:  Patrick C Phillips
Journal:  Nat Rev Genet       Date:  2008-11       Impact factor: 53.242

10.  Genetic networks of liver metabolism revealed by integration of metabolic and transcriptional profiling.

Authors:  Christine T Ferrara; Ping Wang; Elias Chaibub Neto; Robert D Stevens; James R Bain; Brett R Wenner; Olga R Ilkayeva; Mark P Keller; Daniel A Blasiole; Christina Kendziorski; Brian S Yandell; Christopher B Newgard; Alan D Attie
Journal:  PLoS Genet       Date:  2008-03-14       Impact factor: 5.917

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  5 in total

Review 1.  Designing phenotyping studies for genetically engineered mice.

Authors:  C J Zeiss; J M Ward; H G Allore
Journal:  Vet Pathol       Date:  2011-09-19       Impact factor: 2.221

Review 2.  The genetic basis of peripheral arterial disease: current knowledge, challenges, and future directions.

Authors:  Iftikhar J Kullo; Nicholas J Leeper
Journal:  Circ Res       Date:  2015-04-24       Impact factor: 17.367

3.  Cardioinformatics: the nexus of bioinformatics and precision cardiology.

Authors:  Bohdan B Khomtchouk; Diem-Trang Tran; Kasra A Vand; Matthew Might; Or Gozani; Themistocles L Assimes
Journal:  Brief Bioinform       Date:  2020-12-01       Impact factor: 11.622

Review 4.  MicroRNAs--regulators of signaling networks in dilated cardiomyopathy.

Authors:  Sathyamangla V Naga Prasad; Sadashiva S Karnik
Journal:  J Cardiovasc Transl Res       Date:  2010-05-01       Impact factor: 4.132

5.  A Network-Biology Informed Computational Drug Repositioning Strategy to Target Disease Risk Trajectories and Comorbidities of Peripheral Artery Disease.

Authors:  Khader Shameer; Garrett Dow; Benjamin S Glicksberg; Kipp W Johnson; Yi Ze; Max S Tomlinson; Ben Readhead; Joel T Dudley; Iftikhar J Kullo
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18
  5 in total

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