Literature DB >> 19031048

Molecular and cytogenetic characterization of an AT-rich satellite DNA family in Urvillea chacoensis Hunz. (Paullinieae, Sapindaceae).

Juan D Urdampilleta1, Anete Pereira de Souza, Dilaine R S Schneider, André L L Vanzela, María S Ferrucci, Eliana R F Martins.   

Abstract

Urvillea chacoensis is a climber with 2n = 22 and some terminal AT-rich heterochromatin blocks that differentiate it from other species of the genus. The AT-rich highly repeated satellite DNA was isolated from U. chacoensis by the digestion of total nuclear DNA with HindIII and XbaI and cloned in Escherichia coli. Satellite DNA structure and chromosomal distribution were investigated. DNA sequencing revealed that the repeat length of satDNA ranges between 721 and 728 bp, the percentage of AT-base pairs was about 72-73% and the studied clones showed an identity of 92.5-95.9%. Although this monomer has a tetranucleosomal size, direct imperfect repetitions of ~180 bp subdividing it in four nucleosomal subregions were observed. The results obtained with FISH indicate that this monomer usually appears distributed in the terminal regions of most chromosomes and is associated to heterochromatin blocks observed after DAPI staining. These observations are discussed in relation to the satellite DNA evolution and compared with other features observed in several plant groups.

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Year:  2008        PMID: 19031048     DOI: 10.1007/s10709-008-9332-0

Source DB:  PubMed          Journal:  Genetica        ISSN: 0016-6707            Impact factor:   1.082


  25 in total

1.  Molecular cytogenetic analysis of supernumerary heterochromatic segments in Rumex acetosa.

Authors:  F Shibata; M Hizume; Y Kuroki
Journal:  Genome       Date:  2000-04       Impact factor: 2.166

2.  Two new families of tandem repeats isolated from genus Vicia using genomic self-priming PCR.

Authors:  J Macas; D Pozárková; A Navrátilová; M Nouzová; P Neumann
Journal:  Mol Gen Genet       Date:  2000-06

3.  Transition between two forms of heterochromatin at plant subtelomeres.

Authors:  E Sýkorová; J Fajkus; M Ito; K Fukui
Journal:  Chromosome Res       Date:  2001       Impact factor: 5.239

4.  Phylogenetic analysis of the genus Hordeum using repetitive DNA sequences.

Authors:  S Svitashev; T Bryngelsson; A Vershinin; C Pedersen; T Säll; R von Bothmer
Journal:  Theor Appl Genet       Date:  1994-12       Impact factor: 5.699

5.  Sequence analysis of Vicia faba repeated DNA, the FokI repeat element.

Authors:  A Kato; K Yakura; S Tanifuji
Journal:  Nucleic Acids Res       Date:  1984-08-24       Impact factor: 16.971

6.  Repetitive DNA and chromosome evolution in plants.

Authors:  R B Flavell
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1986-01-29       Impact factor: 6.237

7.  Sequence arrangement of a highly methylated satellite DNA of a plant, Scilla: A tandemly repeated inverted repeat.

Authors:  B Deumling
Journal:  Proc Natl Acad Sci U S A       Date:  1981-01       Impact factor: 11.205

8.  Cloning and characterization of ribosomal RNA genes from wheat and barley.

Authors:  W L Gerlach; J R Bedbrook
Journal:  Nucleic Acids Res       Date:  1979-12-11       Impact factor: 16.971

9.  Isolation and characterization of genome-specific DNA sequences in Triticeae species.

Authors:  K Anamthawat-Jónsson; J S Heslop-Harrison
Journal:  Mol Gen Genet       Date:  1993-08

10.  Different AT-rich satellite DNAs in Cucurbita pepo and Cucurbita maxima.

Authors:  M Ganal; V Hemleben
Journal:  Theor Appl Genet       Date:  1986-11       Impact factor: 5.699

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  3 in total

1.  Evolutionary dynamics of an at-rich satellite DNA and its contribution to karyotype differentiation in wild diploid Arachis species.

Authors:  Sergio Sebastián Samoluk; Germán Robledo; David Bertioli; José Guillermo Seijo
Journal:  Mol Genet Genomics       Date:  2016-11-12       Impact factor: 3.291

2.  Centromeric and non-centromeric satellite DNA organisation differs in holocentric Rhynchospora species.

Authors:  Tiago Ribeiro; André Marques; Petr Novák; Veit Schubert; André L L Vanzela; Jiri Macas; Andreas Houben; Andrea Pedrosa-Harand
Journal:  Chromosoma       Date:  2016-09-19       Impact factor: 4.316

3.  Hypomethylation of cytosine residues in cold-sensitive regions of Cestrum strigilatum (Solanaceae).

Authors:  Paula Carolina Paes Guarido; Adriano Alves de Paula; Carlos Roberto Maximiano da Silva; Carmen Rodriguez; André Luís Laforga Vanzela
Journal:  Genet Mol Biol       Date:  2012-05-10       Impact factor: 1.771

  3 in total

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