Literature DB >> 19028721

GWAS GUI: graphical browser for the results of whole-genome association studies with high-dimensional phenotypes.

Wei Chen1, Liming Liang, Gonçalo R Abecasis.   

Abstract

SUMMARY: We describe an interactive package that provides graphical overviews of the results of whole-genome association studies in datasets with rich multi-dimensional phenotypic information, such as global surveys of gene expression. Windows, Linux and Mac binaries are available from our website.

Mesh：

Year:  2008        PMID： 19028721      PMCID： PMC2732294          DOI： 10.1093/bioinformatics/btn600

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  12 in total

1.  Mapping determinants of human gene expression by regional and genome-wide association.

Authors:  Vivian G Cheung; Richard S Spielman; Kathryn G Ewens; Teresa M Weber; Michael Morley; Joshua T Burdick
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

2.  A genome-wide association study of global gene expression.

Authors:  Anna L Dixon; Liming Liang; Miriam F Moffatt; Wei Chen; Simon Heath; Kenny C C Wong; Jenny Taylor; Edward Burnett; Ivo Gut; Martin Farrall; G Mark Lathrop; Gonçalo R Abecasis; William O C Cookson
Journal:  Nat Genet       Date:  2007-09-16       Impact factor: 38.330

3.  Family-based association tests for genomewide association scans.

Authors:  Wei-Min Chen; Goncalo R Abecasis
Journal:  Am J Hum Genet       Date:  2007-09-18       Impact factor: 11.025

4.  A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants.

Authors:  Laura J Scott; Karen L Mohlke; Lori L Bonnycastle; Cristen J Willer; Yun Li; William L Duren; Michael R Erdos; Heather M Stringham; Peter S Chines; Anne U Jackson; Ludmila Prokunina-Olsson; Chia-Jen Ding; Amy J Swift; Narisu Narisu; Tianle Hu; Randall Pruim; Rui Xiao; Xiao-Yi Li; Karen N Conneely; Nancy L Riebow; Andrew G Sprau; Maurine Tong; Peggy P White; Kurt N Hetrick; Michael W Barnhart; Craig W Bark; Janet L Goldstein; Lee Watkins; Fang Xiang; Jouko Saramies; Thomas A Buchanan; Richard M Watanabe; Timo T Valle; Leena Kinnunen; Gonçalo R Abecasis; Elizabeth W Pugh; Kimberly F Doheny; Richard N Bergman; Jaakko Tuomilehto; Francis S Collins; Michael Boehnke
Journal:  Science       Date:  2007-04-26       Impact factor: 47.728

5.  Common variants in the GDF5-UQCC region are associated with variation in human height.

Authors:  Serena Sanna; Anne U Jackson; Ramaiah Nagaraja; Cristen J Willer; Wei-Min Chen; Lori L Bonnycastle; Haiqing Shen; Nicholas Timpson; Guillaume Lettre; Gianluca Usala; Peter S Chines; Heather M Stringham; Laura J Scott; Mariano Dei; Sandra Lai; Giuseppe Albai; Laura Crisponi; Silvia Naitza; Kimberly F Doheny; Elizabeth W Pugh; Yoav Ben-Shlomo; Shah Ebrahim; Debbie A Lawlor; Richard N Bergman; Richard M Watanabe; Manuela Uda; Jaakko Tuomilehto; Josef Coresh; Joel N Hirschhorn; Alan R Shuldiner; David Schlessinger; Francis S Collins; George Davey Smith; Eric Boerwinkle; Antonio Cao; Michael Boehnke; Gonçalo R Abecasis; Karen L Mohlke
Journal:  Nat Genet       Date:  2008-01-13       Impact factor: 38.330

6.  Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls.

Authors: 
Journal:  Nature       Date:  2007-06-07       Impact factor: 49.962

7.  Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma.

Authors:  Miriam F Moffatt; Michael Kabesch; Liming Liang; Anna L Dixon; David Strachan; Simon Heath; Martin Depner; Andrea von Berg; Albrecht Bufe; Ernst Rietschel; Andrea Heinzmann; Burkard Simma; Thomas Frischer; Saffron A G Willis-Owen; Kenny C C Wong; Thomas Illig; Christian Vogelberg; Stephan K Weiland; Erika von Mutius; Gonçalo R Abecasis; Martin Farrall; Ivo G Gut; G Mark Lathrop; William O C Cookson
Journal:  Nature       Date:  2007-07-04       Impact factor: 49.962

8.  Newly identified loci that influence lipid concentrations and risk of coronary artery disease.

Authors:  Cristen J Willer; Serena Sanna; Anne U Jackson; Angelo Scuteri; Lori L Bonnycastle; Robert Clarke; Simon C Heath; Nicholas J Timpson; Samer S Najjar; Heather M Stringham; James Strait; William L Duren; Andrea Maschio; Fabio Busonero; Antonella Mulas; Giuseppe Albai; Amy J Swift; Mario A Morken; Narisu Narisu; Derrick Bennett; Sarah Parish; Haiqing Shen; Pilar Galan; Pierre Meneton; Serge Hercberg; Diana Zelenika; Wei-Min Chen; Yun Li; Laura J Scott; Paul A Scheet; Jouko Sundvall; Richard M Watanabe; Ramaiah Nagaraja; Shah Ebrahim; Debbie A Lawlor; Yoav Ben-Shlomo; George Davey-Smith; Alan R Shuldiner; Rory Collins; Richard N Bergman; Manuela Uda; Jaakko Tuomilehto; Antonio Cao; Francis S Collins; Edward Lakatta; G Mark Lathrop; Michael Boehnke; David Schlessinger; Karen L Mohlke; Gonçalo R Abecasis
Journal:  Nat Genet       Date:  2008-01-13       Impact factor: 38.330

9.  Novel Crohn disease locus identified by genome-wide association maps to a gene desert on 5p13.1 and modulates expression of PTGER4.

Authors:  Cécile Libioulle; Edouard Louis; Sarah Hansoul; Cynthia Sandor; Frédéric Farnir; Denis Franchimont; Séverine Vermeire; Olivier Dewit; Martine de Vos; Anna Dixon; Bruno Demarche; Ivo Gut; Simon Heath; Mario Foglio; Liming Liang; Debby Laukens; Myriam Mni; Diana Zelenika; André Van Gossum; Paul Rutgeerts; Jacques Belaiche; Mark Lathrop; Michel Georges
Journal:  PLoS Genet       Date:  2007-03-05       Impact factor: 5.917

10.  Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits.

Authors:  Angelo Scuteri; Serena Sanna; Wei-Min Chen; Manuela Uda; Giuseppe Albai; James Strait; Samer Najjar; Ramaiah Nagaraja; Marco Orrú; Gianluca Usala; Mariano Dei; Sandra Lai; Andrea Maschio; Fabio Busonero; Antonella Mulas; Georg B Ehret; Ashley A Fink; Alan B Weder; Richard S Cooper; Pilar Galan; Aravinda Chakravarti; David Schlessinger; Antonio Cao; Edward Lakatta; Gonçalo R Abecasis
Journal:  PLoS Genet       Date:  2007-07       Impact factor: 5.917
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  6 in total

Review 1.  Genome-wide association studies--data generation, storage, interpretation, and bioinformatics.

Authors:  Guillaume Pare
Journal:  J Cardiovasc Transl Res       Date:  2010-04-08       Impact factor: 4.132

2.  MAVEN: a tool for visualization and functional analysis of genome-wide association results.

Authors:  Kanchana Narayanan; Jing Li
Journal:  Bioinformatics       Date:  2009-11-17       Impact factor: 6.937

3.  Genevar: a database and Java application for the analysis and visualization of SNP-gene associations in eQTL studies.

Authors:  Tsun-Po Yang; Claude Beazley; Stephen B Montgomery; Antigone S Dimas; Maria Gutierrez-Arcelus; Barbara E Stranger; Panos Deloukas; Emmanouil T Dermitzakis
Journal:  Bioinformatics       Date:  2010-08-10       Impact factor: 6.937

Review 4.  Single-nucleotide polymorphism bioinformatics: a comprehensive review of resources.

Authors:  Andrew D Johnson
Journal:  Circ Cardiovasc Genet       Date:  2009-10

5.  Genome-wide association study identifies HLA-DP as a susceptibility gene for pediatric asthma in Asian populations.

Authors:  Emiko Noguchi; Hiromi Sakamoto; Tomomitsu Hirota; Kaori Ochiai; Yoshimasa Imoto; Masafumi Sakashita; Fumitake Kurosaka; Akira Akasawa; Shigemi Yoshihara; Noriko Kanno; Yumi Yamada; Naoki Shimojo; Yoichi Kohno; Yoichi Suzuki; Mi-Jin Kang; Ji-Won Kwon; Soo-Jong Hong; Ken Inoue; Yu-Ichi Goto; Fumio Yamashita; Takashi Asada; Hiroshi Hirose; Ikuo Saito; Shigeharu Fujieda; Nobuyuki Hizawa; Toru Sakamoto; Hironori Masuko; Yusuke Nakamura; Ichiro Nomura; Mayumi Tamari; Tadao Arinami; Teruhiko Yoshida; Hirohisa Saito; Kenji Matsumoto
Journal:  PLoS Genet       Date:  2011-07-21       Impact factor: 5.917

6.  SNPTransformer: a lightweight toolkit for genome-wide association studies.

Authors:  Changzheng Dong
Journal:  Genomics Proteomics Bioinformatics       Date:  2010-12       Impact factor: 7.691
  6 in total

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