Literature DB >> 19026047

An efficient implementation for determining volume polarization in self-consistent reaction field theory.

Marius J Vilkas1, Chang-Guo Zhan.   

Abstract

An efficient algorithm of the surface and volume polarization for electrostatics (SVPE) method in self-consistent reaction field (SCRF) theory, denoted by SV(1)PE, has been proposed to simulate direct volume polarization potential with a single layer of point charges outside the solute cavity while the indirect effects of volume polarization on surface polarization are still simulated with multiple layers of point charges. The free energies of solvation calculated using the SV(1)PE algorithm (implemented in GAUSSIAN03) reproduce the corresponding values calculated using the standard SVPE implementation within an error of only approximately 0.1% when the solute cavity is defined by the standard 0.001e/a(0) (3) solute charge isodensity contour. The SV(1)PE results are much less sensitive to the used cavity size in comparison with the well-established surface and simulated volume polarization for electrostatics [SS(V)PE] method which simulates volume polarization through an additional surface charge distribution on the cavity surface. The SCRF calculations using the SV(1)PE method are more efficient than those using the original SVPE method.

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Year:  2008        PMID: 19026047      PMCID: PMC2671668          DOI: 10.1063/1.3020767

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

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2.  Solution of the linearized Poisson-Boltzmann equation.

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3.  New formulation and implementation for volume polarization in dielectric continuum theory.

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  5 in total
  8 in total

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8.  Modeling in vitro inhibition of butyrylcholinesterase using molecular docking, multi-linear regression and artificial neural network approaches.

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Journal:  Bioorg Med Chem       Date:  2013-11-08       Impact factor: 3.641

  8 in total

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