Literature DB >> 19021520

Structural and functional comparison of 2-His-1-carboxylate and 3-His metallocentres in non-haem iron(II)-dependent enzymes.

Stefan Leitgeb1, Bernd Nidetzky.   

Abstract

The canonical structural motif for co-ordination of non-haem ferrous iron in metal-dependent oxygenases is a facial triad of two histidine residues and one aspartate or glutamate residue. This so-called 2-His-1-carboxylate metallocentre is often accommodated in a double-stranded beta-helix fold with the iron-co-ordinating residues located in the rigid core structure of the protein. At the sequence level, the metal ligands are arranged in a HXD/E...H motif (where the distance between the conserved histidine residues is variable). Interestingly, cysteine dioxygenase, among a growing number of other iron(II) oxygenases, has the carboxylate residue replaced by another histidine. In the present review, we compare the properties of 3-His and 2-His-1-carboxylate sites based on current evidence from high-resolution crystal structures, spectroscopic characterization of the metal centres and results from mutagenesis studies. Although the overall conformation of the two metal sites is quite similar, the carboxylate residue seems to accommodate a slightly closer co-ordination distance than the counterpart histidine. The ability of the 2-His-1-carboxylate site to fit a site-directed substitution by an alternatively co-ordinating or non-co-ordinating residue with retention of metal-binding capacity and catalytic function varies among different enzymes. However, replacement by histidine disrupted the activity in the three iron(II) oxygenases examined so far.

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Year:  2008        PMID: 19021520     DOI: 10.1042/BST0361180

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  13 in total

1.  Catalytic residues, substrate specificity, and role in carbon starvation of the 2-hydroxy FA dioxygenase Mpo1 in yeast.

Authors:  Keisuke Mori; Takashi Obara; Naoya Seki; Masatoshi Miyamoto; Tatsuro Naganuma; Takuya Kitamura; Akio Kihara
Journal:  J Lipid Res       Date:  2020-04-29       Impact factor: 5.922

2.  Calorimetric assessment of Fe(2+) binding to α-ketoglutarate/taurine dioxygenase: ironing out the energetics of metal coordination by the 2-His-1-carboxylate facial triad.

Authors:  Kate L Henderson; Tina A Müller; Robert P Hausinger; Joseph P Emerson
Journal:  Inorg Chem       Date:  2015-02-10       Impact factor: 5.165

3.  The 3-His Metal Coordination Site Promotes the Coupling of Oxygen Activation to Cysteine Oxidation in Cysteine Dioxygenase.

Authors:  Dianna L Forbes; Kathleen M Meneely; Annemarie S Chilton; Audrey L Lamb; Holly R Ellis
Journal:  Biochemistry       Date:  2020-05-19       Impact factor: 3.162

4.  Spectroscopic and computational characterization of substrate-bound mouse cysteine dioxygenase: nature of the ferrous and ferric cysteine adducts and mechanistic implications.

Authors:  Jessica D Gardner; Brad S Pierce; Brian G Fox; Thomas C Brunold
Journal:  Biochemistry       Date:  2010-07-27       Impact factor: 3.162

5.  Fe(II) complexes that mimic the active site structure of acetylacetone dioxygenase: O2 and NO reactivity.

Authors:  Heaweon Park; Michael M Bittner; Jacob S Baus; Sergey V Lindeman; Adam T Fiedler
Journal:  Inorg Chem       Date:  2012-09-13       Impact factor: 5.165

6.  Spectroscopic and computational characterization of the NO adduct of substrate-bound Fe(II) cysteine dioxygenase: insights into the mechanism of O2 activation.

Authors:  Elizabeth J Blaesi; Jessica D Gardner; Brian G Fox; Thomas C Brunold
Journal:  Biochemistry       Date:  2013-08-23       Impact factor: 3.162

7.  Synthesis, X-ray Structures, Electronic Properties, and O2/NO Reactivities of Thiol Dioxygenase Active-Site Models.

Authors:  Anne A Fischer; Nuru Stracey; Sergey V Lindeman; Thomas C Brunold; Adam T Fiedler
Journal:  Inorg Chem       Date:  2016-11-01       Impact factor: 5.165

8.  Structures of Arabidopsis thaliana oxygen-sensing plant cysteine oxidases 4 and 5 enable targeted manipulation of their activity.

Authors:  Mark D White; Laura Dalle Carbonare; Mikel Lavilla Puerta; Sergio Iacopino; Martin Edwards; Kate Dunne; Elisabete Pires; Colin Levy; Michael A McDonough; Francesco Licausi; Emily Flashman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-31       Impact factor: 11.205

9.  Structures, Spectroscopic Properties, and Dioxygen Reactivity of 5- and 6-Coordinate Nonheme Iron(II) Complexes: A Combined Enzyme/Model Study of Thiol Dioxygenases.

Authors:  Jesse B Gordon; Jeremy P McGale; Joshua R Prendergast; Zahra Shirani-Sarmazeh; Maxime A Siegler; Guy N L Jameson; David P Goldberg
Journal:  J Am Chem Soc       Date:  2018-10-22       Impact factor: 15.419

10.  Stringency of the 2-His-1-Asp active-site motif in prolyl 4-hydroxylase.

Authors:  Kelly L Gorres; Khian Hong Pua; Ronald T Raines
Journal:  PLoS One       Date:  2009-11-05       Impact factor: 3.240

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