Literature DB >> 19012287

Driving force analysis of proton tunnelling across a reactivity series for an enzyme-substrate complex.

Parvinder Hothi1, Sam Hay, Anna Roujeinikova, Michael J Sutcliffe, Michael Lee, David Leys, Paul M Cullis, Nigel S Scrutton.   

Abstract

Quantitative structure-activity relationships are widely used to probe C-H bond breakage by quinoprotein enzymes. However, we showed recently that p-substituted benzylamines are poor reactivity probes for the quinoprotein aromatic amine dehydrogenase (AADH) because of a requirement for structural change in the enzyme-substrate complex prior to C-H bond breakage. This rearrangement is partially rate limiting, which leads to deflated kinetic isotope effects for p-substituted benzylamines. Here we report reactivity (driving force) studies of AADH with p-substituted phenylethylamines for which the kinetic isotope effect (approximately 16) accompanying C-H/C-(2)H bond breakage is elevated above the semi-classical limit. We show bond breakage occurs by quantum tunnelling and that within the context of the environmentally coupled framework for H-tunnelling the presence of the p-substituent places greater demand on the apparent need for fast promoting motions. The crystal structure of AADH soaked with phenylethylamine or methoxyphenylethylamine indicates that the structural change identified with p-substituted benzylamines should not limit the reaction with p-substituted phenylethylamines. This is consistent with the elevated kinetic isotope effects measured with p-substituted phenylethylamines. We find a good correlation in the rate constant for proton transfer with bond dissociation energy for the reactive C-H bond, consistent with a rate that is limited by a Marcus-like tunnelling mechanism. As the driving force becomes larger, the rate of proton transfer increases while the Marcus activation energy becomes smaller. This is the first experimental report of the driving force perturbation of H-tunnelling in enzymes using a series of related substrates. Our study provides further support for proton tunnelling in AADH.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 19012287     DOI: 10.1002/cbic.200800408

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  6 in total

1.  Barrier compression and its contribution to both classical and quantum mechanical aspects of enzyme catalysis.

Authors:  Sam Hay; Linus O Johannissen; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

2.  A 21st century revisionist's view at a turning point in enzymology.

Authors:  Zachary D Nagel; Judith P Klinman
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

3.  The effect of electrostatic shielding on H tunneling in R67 dihydrofolate reductase.

Authors:  Atsushi Yahashiri; Guy Nimrod; Nir Ben-Tal; Elizabeth E Howell; Amnon Kohen
Journal:  Chembiochem       Date:  2009-11-02       Impact factor: 3.164

4.  Reaction of vascular adhesion protein-1 (VAP-1) with primary amines: mechanistic insights from isotope effects and quantitative structure-activity relationships.

Authors:  Dominic P H M Heuts; Jennet O Gummadova; Jiayun Pang; Stephen E J Rigby; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2011-07-07       Impact factor: 5.157

Review 5.  Does the pressure dependence of kinetic isotope effects report usefully on dynamics in enzyme H-transfer reactions?

Authors:  Robin Hoeven; Derren J Heyes; Sam Hay; Nigel S Scrutton
Journal:  FEBS J       Date:  2015-01-29       Impact factor: 5.542

6.  Protonation-Initiated Cyclization by a Class II Terpene Cyclase Assisted by Tunneling.

Authors:  Adam Eriksson; Charlotte Kürten; Per-Olof Syrén
Journal:  Chembiochem       Date:  2017-11-03       Impact factor: 3.164

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.