Literature DB >> 19008193

Activation-induced cytidine deaminase-mediated hypermutation in the DT40 cell line.

Hiroshi Arakawa1, Jean-Marie Buerstedde.   

Abstract

Depending on the species and the developmental stage of B cells, activation-induced cytidine deaminase (AID) triggers immunoglobulin (Ig) gene diversification by gene conversion, hypermutation or switch recombination. The bursal B cell line DT40 usually diversifies its rearranged Ig light chain (IgL) gene by gene conversion, but disruption of the RAD51 gene paralogues or deletion of the psiV conversion donors induces hypermutation. Although not all aspects of somatic hypermutation can be studied in DT40, the compact size of the chicken IgL locus and the ability to modify the genome by targeted integration are powerful experimental advantages. We review here how the studies in DT40 contributed to understanding how AID initiates Ig gene diversification and how AID-induced uracils are subsequently processed by uracil DNA glycosylase, proliferating cell nuclear antigens and error-prone polymerases. We also discuss the on-going research on the Ig locus specificity of hypermutation and the possibility of using hypermutation for the artificial evolution of proteins and regulatory sequences in DT40.

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Year:  2009        PMID: 19008193      PMCID: PMC2660921          DOI: 10.1098/rstb.2008.0202

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  45 in total

1.  Ablation of XRCC2/3 transforms immunoglobulin V gene conversion into somatic hypermutation.

Authors:  J E Sale; D M Calandrini; M Takata; S Takeda; M S Neuberger
Journal:  Nature       Date:  2001-08-30       Impact factor: 49.962

2.  Generation and iterative affinity maturation of antibodies in vitro using hypermutating B-cell lines.

Authors:  Sarah J Cumbers; Gareth T Williams; Sarah L Davies; Richard L Grenfell; Shunichi Takeda; Facundo D Batista; Julian E Sale; Michael S Neuberger
Journal:  Nat Biotechnol       Date:  2002-10-15       Impact factor: 54.908

3.  The E box motif CAGGTG enhances somatic hypermutation without enhancing transcription.

Authors:  Nancy Michael; Hong Ming Shen; Simonne Longerich; Nayun Kim; Angelika Longacre; Ursula Storb
Journal:  Immunity       Date:  2003-08       Impact factor: 31.745

4.  RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO.

Authors:  Carsten Hoege; Boris Pfander; George-Lucian Moldovan; George Pyrowolakis; Stefan Jentsch
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

5.  Immunoglobulin isotype switching is inhibited and somatic hypermutation perturbed in UNG-deficient mice.

Authors:  Cristina Rada; Gareth T Williams; Hilde Nilsen; Deborah E Barnes; Tomas Lindahl; Michael S Neuberger
Journal:  Curr Biol       Date:  2002-10-15       Impact factor: 10.834

6.  Requirement of the activation-induced deaminase (AID) gene for immunoglobulin gene conversion.

Authors:  Hiroshi Arakawa; Jessica Hauschild; Jean-Marie Buerstedde
Journal:  Science       Date:  2002-02-15       Impact factor: 47.728

7.  Rev1 is essential for DNA damage tolerance and non-templated immunoglobulin gene mutation in a vertebrate cell line.

Authors:  Laura J Simpson; Julian E Sale
Journal:  EMBO J       Date:  2003-04-01       Impact factor: 11.598

8.  Immunoglobulin gene conversion in chicken DT40 cells largely proceeds through an abasic site intermediate generated by excision of the uracil produced by AID-mediated deoxycytidine deamination.

Authors:  Javier M Di Noia; Michael S Neuberger
Journal:  Eur J Immunol       Date:  2004-02       Impact factor: 5.532

Review 9.  Immunoglobulin gene conversion: insights from bursal B cells and the DT40 cell line.

Authors:  Hiroshi Arakawa; Jean-Marie Buerstedde
Journal:  Dev Dyn       Date:  2004-03       Impact factor: 3.780

10.  Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase.

Authors:  Javier Di Noia; Michael S Neuberger
Journal:  Nature       Date:  2002-07-31       Impact factor: 49.962

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  14 in total

1.  Directed evolution of mammalian anti-apoptosis proteins by somatic hypermutation.

Authors:  Brian S Majors; Gisela G Chiang; Nels E Pederson; Michael J Betenbaugh
Journal:  Protein Eng Des Sel       Date:  2011-12-09       Impact factor: 1.650

Review 2.  Technologies of directed protein evolution in vivo.

Authors:  Artem Blagodatski; Vladimir L Katanaev
Journal:  Cell Mol Life Sci       Date:  2010-12-29       Impact factor: 9.261

Review 3.  Evolution of B cell immunity.

Authors:  David Parra; Fumio Takizawa; J Oriol Sunyer
Journal:  Annu Rev Anim Biosci       Date:  2013-01       Impact factor: 8.923

4.  Activation-induced cytidine deaminase (AID)-dependent somatic hypermutation requires a splice isoform of the serine/arginine-rich (SR) protein SRSF1.

Authors:  Yuichi Kanehiro; Kagefumi Todo; Misaki Negishi; Junji Fukuoka; Wenjian Gan; Takuya Hikasa; Yoshiaki Kaga; Masayuki Takemoto; Masaki Magari; Xialu Li; James L Manley; Hitoshi Ohmori; Naoki Kanayama
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

5.  Ig Enhancers Increase RNA Polymerase II Stalling at Somatic Hypermutation Target Sequences.

Authors:  Alina Tarsalainen; Yaakov Maman; Fei-Long Meng; Minna K Kyläniemi; Anni Soikkeli; Paulina Budzyńska; Jessica J McDonald; Filip Šenigl; Frederic W Alt; David G Schatz; Jukka Alinikula
Journal:  J Immunol       Date:  2021-12-03       Impact factor: 5.422

6.  Induction of homologous recombination between sequence repeats by the activation induced cytidine deaminase (AID) protein.

Authors:  Jean-Marie Buerstedde; Noel Lowndes; David G Schatz
Journal:  Elife       Date:  2014-07-08       Impact factor: 8.140

7.  Identification of core DNA elements that target somatic hypermutation.

Authors:  Kristin M Kohler; Jessica J McDonald; Jamie L Duke; Hiroshi Arakawa; Sally Tan; Steven H Kleinstein; Jean-Marie Buerstedde; David G Schatz
Journal:  J Immunol       Date:  2012-10-19       Impact factor: 5.422

8.  Activation-induced Cytidine Deaminase in B Cell Immunity and Cancers.

Authors:  Seok-Rae Park
Journal:  Immune Netw       Date:  2012-12-31       Impact factor: 6.303

9.  MSH6- or PMS2-deficiency causes re-replication in DT40 B cells, but it has little effect on immunoglobulin gene conversion or on repair of AID-generated uracils.

Authors:  Vanina A Campo; Anne-Marie Patenaude; Svenja Kaden; Lori Horb; Daniel Firka; Josef Jiricny; Javier M Di Noia
Journal:  Nucleic Acids Res       Date:  2013-01-11       Impact factor: 16.971

10.  Targeting of somatic hypermutation by immunoglobulin enhancer and enhancer-like sequences.

Authors:  Jean-Marie Buerstedde; Jukka Alinikula; Hiroshi Arakawa; Jessica J McDonald; David G Schatz
Journal:  PLoS Biol       Date:  2014-04-01       Impact factor: 8.029

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