Literature DB >> 19007336

A review of independent component analysis application to microarray gene expression data.

Wei Kong1, Charles R Vanderburg, Hiromi Gunshin, Jack T Rogers, Xudong Huang.   

Abstract

Independent component analysis (ICA) methods have received growing attention as effective data-mining tools for microarray gene expression data. As a technique of higher-order statistical analysis, ICA is capable of extracting biologically relevant gene expression features from microarray data. Herein we have reviewed the latest applications and the extended algorithms of ICA in gene clustering, classification, and identification. The theoretical frameworks of ICA have been described to further illustrate its feature extraction function in microarray data analysis.

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Year:  2008        PMID: 19007336      PMCID: PMC3005719          DOI: 10.2144/000112950

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  27 in total

1.  Independent component approach to the analysis of EEG and MEG recordings.

Authors:  R Vigário; J Särelä; V Jousmäki; M Hämäläinen; E Oja
Journal:  IEEE Trans Biomed Eng       Date:  2000-05       Impact factor: 4.538

2.  Interactive exploration of microarray gene expression patterns in a reduced dimensional space.

Authors:  Jatin Misra; William Schmitt; Daehee Hwang; Li-Li Hsiao; Steve Gullans; George Stephanopoulos; Gregory Stephanopoulos
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

3.  Validating the independent components of neuroimaging time series via clustering and visualization.

Authors:  Johan Himberg; Aapo Hyvärinen; Fabrizio Esposito
Journal:  Neuroimage       Date:  2004-07       Impact factor: 6.556

4.  Learning the higher-order structure of a natural sound.

Authors:  A J Bell; T J Sejnowski
Journal:  Network       Date:  1996-05       Impact factor: 1.273

5.  Latent variable and nICA modeling of pathway gene module composite.

Authors:  Ting Gong; Yitan Zhu; Jianhua Xuan; Huai Li; Robert Clarke; Eric P Hoffman; Yue Wang
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

6.  Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene.

Authors:  C H Yuh; H Bolouri; E H Davidson
Journal:  Science       Date:  1998-03-20       Impact factor: 47.728

7.  Source density-driven independent component analysis approach for fMRI data.

Authors:  Baoming Hong; Godfrey D Pearlson; Vince D Calhoun
Journal:  Hum Brain Mapp       Date:  2005-07       Impact factor: 5.038

8.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

Review 9.  Independent component analysis for biomedical signals.

Authors:  Christopher J James; Christian W Hesse
Journal:  Physiol Meas       Date:  2005-02       Impact factor: 2.833

10.  Application of independent component analysis to microarrays.

Authors:  Su-In Lee; Serafim Batzoglou
Journal:  Genome Biol       Date:  2003-10-24       Impact factor: 13.583

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  34 in total

1.  Independent component analysis: mining microarray data for fundamental human gene expression modules.

Authors:  Jesse M Engreitz; Bernie J Daigle; Jonathan J Marshall; Russ B Altman
Journal:  J Biomed Inform       Date:  2010-07-07       Impact factor: 6.317

2.  An evaluation of independent component analyses with an application to resting-state fMRI.

Authors:  Benjamin B Risk; David S Matteson; David Ruppert; Ani Eloyan; Brian S Caffo
Journal:  Biometrics       Date:  2013-12-18       Impact factor: 2.571

3.  Genome-wide analysis of a Wnt1-regulated transcriptional network implicates neurodegenerative pathways.

Authors:  Eric M Wexler; Ezra Rosen; Daning Lu; Gregory E Osborn; Elizabeth Martin; Helen Raybould; Daniel H Geschwind
Journal:  Sci Signal       Date:  2011-10-04       Impact factor: 8.192

4.  Utilization of gene profiling and proteomics to determine mineral pathogenicity in a human mesothelial cell line (LP9/TERT-1).

Authors:  Jedd M Hillegass; Arti Shukla; Maximilian B MacPherson; Jeffrey P Bond; Chad Steele; Brooke T Mossman
Journal:  J Toxicol Environ Health A       Date:  2010

5.  Mutual Information Scaling for Tensor Network Machine Learning.

Authors:  Ian Convy; William Huggins; Haoran Liao; K Birgitta Whaley
Journal:  Mach Learn Sci Technol       Date:  2022-01-20

6.  Nature-inspired metaheuristics model for gene selection and classification of biomedical microarray data.

Authors:  Rabia Musheer Aziz
Journal:  Med Biol Eng Comput       Date:  2022-04-11       Impact factor: 2.602

7.  Application of Independent Component Analysis Techniques in Speckle Noise Reduction of Retinal OCT Images.

Authors:  Ahmadreza Baghaie; Roshan M D'Souza; Zeyun Yu
Journal:  Optik (Stuttg)       Date:  2016-08       Impact factor: 2.443

8.  An exploratory data analysis method to reveal modular latent structures in high-throughput data.

Authors:  Tianwei Yu
Journal:  BMC Bioinformatics       Date:  2010-08-27       Impact factor: 3.169

9.  Metabolic module mining based on Independent Component Analysis in Arabidopsis thaliana.

Authors:  Xiao Han; Cong Chen; Tae Kyung Hyun; Ritesh Kumar; Jae-Yean Kim
Journal:  Mol Cells       Date:  2012-09-07       Impact factor: 5.034

10.  Tumor Classification Using High-Order Gene Expression Profiles Based on Multilinear ICA.

Authors:  Ming-Gang Du; Shan-Wen Zhang; Hong Wang
Journal:  Adv Bioinformatics       Date:  2009-07-20
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