Literature DB >> 19004866

A novel gel-based method for self-collection and ambient temperature postal transport of urine for PCR detection of Chlamydia trachomatis.

S Bialasiewicz1, D M Whiley, M Buhrer-Skinner, C Bautista, K Barker, S Aitken, R Gordon, R Muller, S B Lambert, J Debattista, M D Nissen, T P Sloots.   

Abstract

OBJECTIVES: The aim of this study was to develop a novel urine transport method to be used in self-collection-based screening for Chlamydia trachomatis. The method needed to be suitable for C trachomatis PCR detection, be economical and suitable for transport by standard envelope mailing.
METHODS: An anhydrous gel composed of super-absorbent polymer and buffering agent was used to desiccate urine into a dry granulous state, which could subsequently be reconstituted upon arrival at a laboratory. DNA was then extracted from the reconstituted solution using the Roche MagNA Pure protocol for the detection of C trachomatis by PCR. Collections of urine specimens from three populations with widely differing chlamydia prevalence (100%,n = 56; 47%, n = 70; 3%, n = 97) were used. We determined the gel method's impact on C trachomatis PCR sensitivity and specificity using neat and gel-processed urine specimens. An equine herpes virus PCR was used to test for assay inhibition.
RESULTS: Overall, the sensitivity of the gel-based method ranged from 94.6-100% compared with neat urine, with a specificity of 100%. No PCR inhibition or decrease in analytical sensitivity was observed using the gel-processed extracts.
CONCLUSIONS: The gel-based method was found to be suitable for the detection of C trachomatis by PCR. In addition, its ease of use, effectiveness at ambient temperature and low cost makes it well-suited for self-collection kits used in population-based C trachomatis screening, particularly for geographically and socially isolated individuals.

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Year:  2008        PMID: 19004866     DOI: 10.1136/sti.2008.032607

Source DB:  PubMed          Journal:  Sex Transm Infect        ISSN: 1368-4973            Impact factor:   3.519


  10 in total

Review 1.  Home versus clinic-based specimen collection for Chlamydia trachomatis and Neisseria gonorrhoeae.

Authors:  Anna S Graseck; Shirley L Shih; Jeffrey F Peipert
Journal:  Expert Rev Anti Infect Ther       Date:  2011-02       Impact factor: 5.091

2.  A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers.

Authors:  Rebecca J Rockett; Sarah J Tozer; Chris Peatey; Seweryn Bialasiewicz; David M Whiley; Michael D Nissen; Katharine Trenholme; James S Mc Carthy; Theo P Sloots
Journal:  Malar J       Date:  2011-02-28       Impact factor: 2.979

3.  Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control.

Authors:  Asma N Alsaleh; David M Whiley; Seweryn Bialasiewicz; Stephen B Lambert; Robert S Ware; Michael D Nissen; Theo P Sloots; Keith Grimwood
Journal:  BMC Infect Dis       Date:  2014-01-09       Impact factor: 3.090

4.  Potential Route of Transmission for Trichodysplasia Spinulosa Polyomavirus.

Authors:  Seweryn Bialasiewicz; Lisa Byrom; Chris Fraser; Julia Clark
Journal:  J Infect Dis       Date:  2017-04-01       Impact factor: 5.226

5.  Assessing Plasmodium falciparum transmission in mosquito-feeding assays using quantitative PCR.

Authors:  Claire Y T Wang; James S McCarthy; Will J Stone; Teun Bousema; Katharine A Collins; Seweryn Bialasiewicz
Journal:  Malar J       Date:  2018-07-05       Impact factor: 2.979

6.  Successful application of a simple specimen transport method for the conduct of respiratory virus surveillance in remote Indigenous communities in Australia.

Authors:  Kerry-Ann F O'Grady; Paul J Torzillo; Rebecca J Rockett; David M Whiley; Michael D Nissen; Theo P Sloots; Stephen B Lambert
Journal:  Trop Med Int Health       Date:  2011-03-21       Impact factor: 2.622

7.  Analytical validation of a real-time hydrolysis probe PCR assay for quantifying Plasmodium falciparum parasites in experimentally infected human adults.

Authors:  Claire Y T Wang; Emma L Ballard; Zuleima Pava; Louise Marquart; Jane Gaydon; Sean C Murphy; David Whiley; Peter O'Rourke; James S McCarthy
Journal:  Malar J       Date:  2021-04-10       Impact factor: 2.979

Review 8.  Mapping Evidence of Self-Sampling to Diagnose Sexually Transmitted Infections in Women: A Scoping Review.

Authors:  Ziningi N Jaya; Witness Mapanga; Brian van Niekerk; Thobeka Dlangalala; Kabelo Kgarosi; Mathias Dzobo; Delarise Mulqueeny; Tivani P Mashamba-Thompson
Journal:  Diagnostics (Basel)       Date:  2022-07-26

9.  Novel High-Throughput Multiplex qPCRs for the Detection of Canine Vector-Borne Pathogens in the Asia-Pacific.

Authors:  Lucas Huggins; Luca Massetti; Bettina Schunack; Vito Colella; Rebecca Traub
Journal:  Microorganisms       Date:  2021-05-19

10.  Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid.

Authors:  Rebecca J Rockett; Theo P Sloots; Sharleen Bowes; Nicholas O'Neill; Suifang Ye; Jenny Robson; David M Whiley; Stephen B Lambert; David Wang; Michael D Nissen; Seweryn Bialasiewicz
Journal:  PLoS One       Date:  2013-05-08       Impact factor: 3.240

  10 in total

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