Literature DB >> 19004758

The influence of sex, handedness, and washing on the diversity of hand surface bacteria.

Noah Fierer1, Micah Hamady, Christian L Lauber, Rob Knight.   

Abstract

Bacteria thrive on and within the human body. One of the largest human-associated microbial habitats is the skin surface, which harbors large numbers of bacteria that can have important effects on health. We examined the palmar surfaces of the dominant and nondominant hands of 51 healthy young adult volunteers to characterize bacterial diversity on hands and to assess its variability within and between individuals. We used a novel pyrosequencing-based method that allowed us to survey hand surface bacterial communities at an unprecedented level of detail. The diversity of skin-associated bacterial communities was surprisingly high; a typical hand surface harbored >150 unique species-level bacterial phylotypes, and we identified a total of 4,742 unique phylotypes across all of the hands examined. Although there was a core set of bacterial taxa commonly found on the palm surface, we observed pronounced intra- and interpersonal variation in bacterial community composition: hands from the same individual shared only 17% of their phylotypes, with different individuals sharing only 13%. Women had significantly higher diversity than men, and community composition was significantly affected by handedness, time since last hand washing, and an individual's sex. The variation within and between individuals in microbial ecology illustrated by this study emphasizes the challenges inherent in defining what constitutes a "healthy" bacterial community; addressing these challenges will be critical for the International Human Microbiome Project.

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Year:  2008        PMID: 19004758      PMCID: PMC2584711          DOI: 10.1073/pnas.0807920105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Diversity of the human intestinal microbial flora.

Authors:  Paul B Eckburg; Elisabeth M Bik; Charles N Bernstein; Elizabeth Purdom; Les Dethlefsen; Michael Sargent; Steven R Gill; Karen E Nelson; David A Relman
Journal:  Science       Date:  2005-04-14       Impact factor: 47.728

2.  Distribution of typical freshwater bacterial groups is associated with pH, temperature, and lake water retention time.

Authors:  Eva S Lindström; Miranda P Kamst-Van Agterveld; Gabriel Zwart
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

3.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

4.  Evaluation of gender difference in skin type and pH.

Authors:  Myo-Kyoung Kim; Rajul A Patel; Annie H Shinn; Sun-Young Choi; Hee-Jin Byun; Chang-Hun Huh; Kyoung-Chan Park; Sang-Woong Youn
Journal:  J Dermatol Sci       Date:  2006-01-06       Impact factor: 4.563

5.  The diversity and biogeography of soil bacterial communities.

Authors:  Noah Fierer; Robert B Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-09       Impact factor: 11.205

Review 6.  A molecular view of microbial diversity and the biosphere.

Authors:  N R Pace
Journal:  Science       Date:  1997-05-02       Impact factor: 47.728

7.  Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions.

Authors:  Luciana C Paulino; Chi-Hong Tseng; Bruce E Strober; Martin J Blaser
Journal:  J Clin Microbiol       Date:  2006-08       Impact factor: 5.948

8.  Detection of potentially novel bacterial components of the human skin microbiota using culture-independent molecular profiling.

Authors:  Itaru Dekio; Hidenori Hayashi; Mitsuo Sakamoto; Maki Kitahara; Takeji Nishikawa; Makoto Suematsu; Yoshimi Benno
Journal:  J Med Microbiol       Date:  2005-12       Impact factor: 2.472

9.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

10.  NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.

Authors:  T Z DeSantis; P Hugenholtz; K Keller; E L Brodie; N Larsen; Y M Piceno; R Phan; G L Andersen
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

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  428 in total

Review 1.  Immunostimulation in the era of the metagenome.

Authors:  Amy D Proal; Paul J Albert; Greg P Blaney; Inge A Lindseth; Chris Benediktsson; Trevor G Marshall
Journal:  Cell Mol Immunol       Date:  2011-01-31       Impact factor: 11.530

2.  Fungal community composition in neotropical rain forests: the influence of tree diversity and precipitation.

Authors:  Krista L McGuire; Noah Fierer; Carling Bateman; Kathleen K Treseder; Benjamin L Turner
Journal:  Microb Ecol       Date:  2011-11-12       Impact factor: 4.552

3.  Stochastic and deterministic assembly processes in subsurface microbial communities.

Authors:  James C Stegen; Xueju Lin; Allan E Konopka; James K Fredrickson
Journal:  ISME J       Date:  2012-03-29       Impact factor: 10.302

4.  Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer.

Authors:  Xueju Lin; James McKinley; Charles T Resch; Rachael Kaluzny; Christian L Lauber; James Fredrickson; Rob Knight; Allan Konopka
Journal:  ISME J       Date:  2012-03-29       Impact factor: 10.302

5.  Comparison of bacterial DNA profiles of footwear insoles and soles of feet for the forensic discrimination of footwear owners.

Authors:  Haruhisa Goga
Journal:  Int J Legal Med       Date:  2012-06-23       Impact factor: 2.686

6.  Quantitation of major human cutaneous bacterial and fungal populations.

Authors:  Zhan Gao; Guillermo I Perez-Perez; Yu Chen; Martin J Blaser
Journal:  J Clin Microbiol       Date:  2010-08-11       Impact factor: 5.948

7.  Harnessing the power of the human microbiome.

Authors:  Martin J Blaser
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-01       Impact factor: 11.205

8.  Forensic identification using skin bacterial communities.

Authors:  Noah Fierer; Christian L Lauber; Nick Zhou; Daniel McDonald; Elizabeth K Costello; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-15       Impact factor: 11.205

9.  Biogeography and habitat modelling of high-alpine bacteria.

Authors:  Andrew J King; Kristen R Freeman; Katherine F McCormick; Ryan C Lynch; Catherine Lozupone; Rob Knight; Steven K Schmidt
Journal:  Nat Commun       Date:  2010-08-10       Impact factor: 14.919

10.  Effects of moderate, voluntary ethanol consumption on the rat and human gut microbiome.

Authors:  Kassi L Kosnicki; Jerrold C Penprase; Patricia Cintora; Pedro J Torres; Greg L Harris; Susan M Brasser; Scott T Kelley
Journal:  Addict Biol       Date:  2018-05-11       Impact factor: 4.280

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