Literature DB >> 19001275

Domain compliance and elastic power transmission in rotary F(O)F(1)-ATPase.

Hendrik Sielaff1, Henning Rennekamp, André Wächter, Hao Xie, Florian Hilbers, Katrin Feldbauer, Stanley D Dunn, Siegfried Engelbrecht, Wolfgang Junge.   

Abstract

The 2 nanomotors of rotary ATP synthase, ionmotive F(O) and chemically active F(1), are mechanically coupled by a central rotor and an eccentric bearing. Both motors rotate, with 3 steps in F(1) and 10-15 in F(O). Simulation by statistical mechanics has revealed that an elastic power transmission is required for a high rate of coupled turnover. Here, we investigate the distribution in the F(O)F(1) structure of compliant and stiff domains. The compliance of certain domains was restricted by engineered disulfide bridges between rotor and stator, and the torsional stiffness (kappa) of unrestricted domains was determined by analyzing their thermal rotary fluctuations. A fluorescent magnetic bead was attached to single molecules of F(1) and a fluorescent actin filament to F(O)F(1), respectively. They served to probe first the functional rotation and, after formation of the given disulfide bridge, the stochastic rotational motion. Most parts of the enzyme, in particular the central shaft in F(1), and the long eccentric bearing were rather stiff (torsional stiffness kappa > 750 pNnm). One domain of the rotor, namely where the globular portions of subunits gamma and epsilon of F(1) contact the c-ring of F(O), was more compliant (kappa congruent with 68 pNnm). This elastic buffer smoothes the cooperation of the 2 stepping motors. It is located were needed, between the 2 sites where the power strokes in F(O) and F(1) are generated and consumed.

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Year:  2008        PMID: 19001275      PMCID: PMC2584700          DOI: 10.1073/pnas.0807683105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  46 in total

1.  Rotation of Escherichia coli F(1)-ATPase.

Authors:  H Noji; K Häsler; W Junge; K Kinosita; M Yoshida; S Engelbrecht
Journal:  Biochem Biophys Res Commun       Date:  1999-07-14       Impact factor: 3.575

2.  Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis.

Authors:  R I Menz; J E Walker; A G Leslie
Journal:  Cell       Date:  2001-08-10       Impact factor: 41.582

Review 3.  Inter-subunit rotation and elastic power transmission in F0F1-ATPase.

Authors:  W Junge; O Pänke; D A Cherepanov; K Gumbiowski; M Müller; S Engelbrecht
Journal:  FEBS Lett       Date:  2001-08-31       Impact factor: 4.124

4.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

5.  The rotor tip inside a bearing of a thermophilic F1-ATPase is dispensable for torque generation.

Authors:  Mohammad Delawar Hossain; Shou Furuike; Yasushi Maki; Kengo Adachi; M Yusuf Ali; Mominul Huq; Hiroyasu Itoh; Masasuke Yoshida; Kazuhiko Kinosita
Journal:  Biophys J       Date:  2006-06-01       Impact factor: 4.033

6.  How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase.

Authors:  Jingzhi Pu; Martin Karplus
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-23       Impact factor: 11.205

Review 7.  ATP synthase: an electrochemical transducer with rotatory mechanics.

Authors:  W Junge; H Lill; S Engelbrecht
Journal:  Trends Biochem Sci       Date:  1997-11       Impact factor: 13.807

8.  F-ATPase: specific observation of the rotating c subunit oligomer of EF(o)EF(1).

Authors:  O Pänke; K Gumbiowski; W Junge; S Engelbrecht
Journal:  FEBS Lett       Date:  2000-04-21       Impact factor: 4.124

9.  Genetic fusions of globular proteins to the epsilon subunit of the Escherichia coli ATP synthase: Implications for in vivo rotational catalysis and epsilon subunit function.

Authors:  Daniel J Cipriano; Yumin Bi; Stanley D Dunn
Journal:  J Biol Chem       Date:  2002-03-01       Impact factor: 5.157

10.  The "second stalk" of Escherichia coli ATP synthase: structure of the isolated dimerization domain.

Authors:  Paul A Del Rizzo; Yumin Bi; Stanley D Dunn; Brian H Shilton
Journal:  Biochemistry       Date:  2002-05-28       Impact factor: 3.162

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  58 in total

1.  Mechanical modulation of catalytic power on F1-ATPase.

Authors:  Rikiya Watanabe; Daichi Okuno; Shouichi Sakakihara; Katsuya Shimabukuro; Ryota Iino; Masasuke Yoshida; Hiroyuki Noji
Journal:  Nat Chem Biol       Date:  2011-11-20       Impact factor: 15.040

2.  Thermodynamic efficiency and mechanochemical coupling of F1-ATPase.

Authors:  Shoichi Toyabe; Takahiro Watanabe-Nakayama; Tetsuaki Okamoto; Seishi Kudo; Eiro Muneyuki
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-13       Impact factor: 11.205

3.  Simple dark-field microscopy with nanometer spatial precision and microsecond temporal resolution.

Authors:  Hiroshi Ueno; So Nishikawa; Ryota Iino; Kazuhito V Tabata; Shouichi Sakakihara; Toshio Yanagida; Hiroyuki Noji
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

4.  Theoretical analysis of the F(1)-ATPase experimental data.

Authors:  Ruben Perez-Carrasco; J M Sancho
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

5.  Elasticity, friction, and pathway of γ-subunit rotation in FoF1-ATP synthase.

Authors:  Kei-ichi Okazaki; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

6.  Load-dependent destabilization of the γ-rotor shaft in FOF1 ATP synthase revealed by hydrogen/deuterium-exchange mass spectrometry.

Authors:  Siavash Vahidi; Yumin Bi; Stanley D Dunn; Lars Konermann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

7.  Direct observation of stepped proteolipid ring rotation in E. coli F₀F₁-ATP synthase.

Authors:  Robert Ishmukhametov; Tassilo Hornung; David Spetzler; Wayne D Frasch
Journal:  EMBO J       Date:  2010-10-29       Impact factor: 11.598

8.  Functional halt positions of rotary FOF1-ATPase correlated with crystal structures.

Authors:  Hendrik Sielaff; Henning Rennekamp; Siegfried Engelbrecht; Wolfgang Junge
Journal:  Biophys J       Date:  2008-08-22       Impact factor: 4.033

9.  Catalysis-enhancement via rotary fluctuation of F1-ATPase.

Authors:  Rikiya Watanabe; Kumiko Hayashi; Hiroshi Ueno; Hiroyuki Noji
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

10.  Torsional elasticity and energetics of F1-ATPase.

Authors:  Jacek Czub; Helmut Grubmüller
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-18       Impact factor: 11.205

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