Literature DB >> 19000813

Structure and function of the Pre-mRNA splicing machine.

Joseph Sperling1, Maia Azubel, Ruth Sperling.   

Abstract

Most eukaryotic pre-mRNAs contain non-coding sequences (introns) that must be removed in order to accurately place the coding sequences (exons) in the correct reading frame. This critical regulatory pre-mRNA splicing event is fundamental in development and cancer. It occurs within a mega-Dalton multicomponent machine composed of RNA and proteins, which undergoes dynamic changes in RNA-RNA, RNA-protein, and protein-protein interactions during the splicing reaction. Recent years have seen progress in functional and structural analyses of the splicing machine and its subcomponents, and this review is focused on structural aspects of the pre-mRNA splicing machine and their mechanistic implications on the splicing of multi-intronic pre-mRNAs. It brings together, in a comparative manner, structural information on spliceosomes and their intermediates in the stepwise assembly process in vitro, and on the preformed supraspliceosomes, which are isolated from living cell nuclei, with a view of portraying a consistent picture.

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Year:  2008        PMID: 19000813     DOI: 10.1016/j.str.2008.08.011

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  45 in total

1.  Studies on subcellular compartmentalization of plant pathogenic noncoding RNAs give new insights into the intracellular RNA-traffic mechanisms.

Authors:  Gustavo Gómez; Vicente Pallas
Journal:  Plant Physiol       Date:  2012-04-03       Impact factor: 8.340

Review 2.  Function of chloroplast RNA-binding proteins.

Authors:  Jessica Jacobs; Ulrich Kück
Journal:  Cell Mol Life Sci       Date:  2010-09-17       Impact factor: 9.261

3.  Identification of a plant-specific Zn2+-sensitive ribonuclease activity.

Authors:  Denghui Xing; Shuisong Ni; Michael A Kennedy; Qingshun Quinn Li
Journal:  Planta       Date:  2009-07-28       Impact factor: 4.116

4.  Identification of a chloroplast ribonucleoprotein complex containing trans-splicing factors, intron RNA, and novel components.

Authors:  Jessica Jacobs; Christina Marx; Vera Kock; Olga Reifschneider; Benjamin Fränzel; Christoph Krisp; Dirk Wolters; Ulrich Kück
Journal:  Mol Cell Proteomics       Date:  2013-04-04       Impact factor: 5.911

5.  The differential interaction of snRNPs with pre-mRNA reveals splicing kinetics in living cells.

Authors:  Martina Huranová; Ivan Ivani; Ales Benda; Ina Poser; Yehuda Brody; Martin Hof; Yaron Shav-Tal; Karla M Neugebauer; David Stanek
Journal:  J Cell Biol       Date:  2010-10-04       Impact factor: 10.539

6.  Both size and GC-content of minimal introns are selected in human populations.

Authors:  Dapeng Wang; Jun Yu
Journal:  PLoS One       Date:  2011-03-17       Impact factor: 3.240

7.  Heterogeneous nuclear ribonucleoprotein G regulates splice site selection by binding to CC(A/C)-rich regions in pre-mRNA.

Authors:  Bettina Heinrich; Zhaiyi Zhang; Oleg Raitskin; Michael Hiller; Natalya Benderska; Annette M Hartmann; Laurent Bracco; David Elliott; Shani Ben-Ari; Hermona Soreq; Joseph Sperling; Ruth Sperling; Stefan Stamm
Journal:  J Biol Chem       Date:  2009-03-12       Impact factor: 5.157

8.  Comparative genomics RNAi screen identifies Eftud2 as a novel regulator of innate immunity.

Authors:  Lesly De Arras; Rebecca Laws; Sonia M Leach; Kyle Pontis; Jonathan H Freedman; David A Schwartz; Scott Alper
Journal:  Genetics       Date:  2013-12-20       Impact factor: 4.562

Review 9.  MicroRNA-biogenesis and Pre-mRNA splicing crosstalk.

Authors:  Noam Shomron; Carmit Levy
Journal:  J Biomed Biotechnol       Date:  2009-07-06

10.  The N-terminus of Prp1 (Prp6/U5-102 K) is essential for spliceosome activation in vivo.

Authors:  Martin Lützelberger; Claudia A Bottner; Wiebke Schwelnus; Susanne Zock-Emmenthal; Aleh Razanau; Norbert F Käufer
Journal:  Nucleic Acids Res       Date:  2009-12-09       Impact factor: 16.971

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