Literature DB >> 18999560

Hydrodynamic interactions for single dissipative-particle-dynamics particles and their clusters and filaments.

Wenxiao Pan1, Dmitry A Fedosov, George Em Karniadakis, Bruce Caswell.   

Abstract

We have investigated low Reynolds number flow past single dissipative-particle-dynamics particles (point centers of repulsion), their clusters, and their filaments using dissipative-particle-dynamics (DPD) simulations. The objective of our study was to verify whether DPD particles immersed in a sea of DPD particles behave like Langevin particles suspended in a continuous Newtonian fluid solvent, the basis of Brownian dynamics. Our principal test is to compare two effective DPD radii calculated by independent means. From the calculated coefficients of self-diffusion and viscosity the Stokes-Einstein equation yields an intrinsic radius, and from simulations of flow past a single fixed DPD particle a second radius is calculated from Stokes law. In the limit of small Reynolds number the two radii were found to approach each other. Hydrodynamic interactions were studied with Stokes flow past two DPD particles, and single DPD particles in bounded uniform flow and in-plane Poiseuille flow. Additional simulations examined closely spaced multiparticle clusters (straight-chains and hexagonal-packed aggregates). For all cases of rigid bodies the simulation results are in good agreement with predictions derived analytically from the continuum Stokes system. Elastic filaments, DPD-particle chains with bending resistance, were also simulated to examine hydrodynamically induced distortions, and the results show that the model captures the correct hydrodynamic interactions among filament beads.

Entities:  

Year:  2008        PMID: 18999560     DOI: 10.1103/PhysRevE.78.046706

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

1.  Blood flow and cell-free layer in microvessels.

Authors:  Dmitry A Fedosov; Bruce Caswell; Aleksander S Popel; George Em Karniadakis
Journal:  Microcirculation       Date:  2010-11       Impact factor: 2.628

2.  Shear-Induced Migration of a Transmembrane Protein within a Vesicle.

Authors:  Koyo Nakamura; Toshihiro Omori; Takuji Ishikawa
Journal:  Biophys J       Date:  2019-03-28       Impact factor: 4.033

3.  A low-dimensional model for the red blood cell.

Authors:  Wenxiao Pan; Bruce Caswell; George Em Karniadakis
Journal:  Soft Matter       Date:  2010-09-21       Impact factor: 3.679

4.  Parallel multiscale simulations of a brain aneurysm.

Authors:  Leopold Grinberg; Dmitry A Fedosov; George Em Karniadakis
Journal:  J Comput Phys       Date:  2013-07-01       Impact factor: 3.553

5.  Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees.

Authors:  Kirill Lykov; Xuejin Li; Huan Lei; Igor V Pivkin; George Em Karniadakis
Journal:  PLoS Comput Biol       Date:  2015-08-28       Impact factor: 4.475

  5 in total

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