Literature DB >> 18999051

Optimizing A syndromic surveillance text classifier for influenza-like illness: Does document source matter?

Brett R South1, Brett Ray South, Wendy W Chapman, Wendy Chapman, Sylvain Delisle, Shuying Shen, Ericka Kalp, Trish Perl, Matthew H Samore, Adi V Gundlapalli.   

Abstract

Syndromic surveillance systems that incorporate electronic free-text data have primarily focused on extracting concepts of interest from chief complaint text, emergency department visit notes, and nurse triage notes. Due to availability and access, there has been limited work in the area of surveilling the full text of all electronic note documents compared with more specific document sources. This study provides an evaluation of the performance of a text classifier for detection of influenza-like illness (ILI) by document sources that are commonly used for biosurveillance by comparing them to routine visit notes, and a full electronic note corpus approach. Evaluating the performance of an automated text classifier for syndromic surveillance by source document will inform decisions regarding electronic textual data sources for potential use by automated biosurveillance systems. Even when a full electronic medical record is available, commonly available surveillance source documents provide acceptable statistical performance for automated ILI surveillance.

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Mesh:

Year:  2008        PMID: 18999051      PMCID: PMC2655960     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  9 in total

1.  Determining the area under the ROC curve for a binary diagnostic test.

Authors:  S B Cantor; M W Kattan
Journal:  Med Decis Making       Date:  2000 Oct-Dec       Impact factor: 2.583

2.  A simple algorithm for identifying negated findings and diseases in discharge summaries.

Authors:  W W Chapman; W Bridewell; P Hanbury; G F Cooper; B G Buchanan
Journal:  J Biomed Inform       Date:  2001-10       Impact factor: 6.317

3.  Identifying respiratory findings in emergency department reports for biosurveillance using MetaMap.

Authors:  Wendy W Chapman; Marcelo Fiszman; John N Dowling; Brian E Chapman; Thomas C Rindflesch
Journal:  Stud Health Technol Inform       Date:  2004

4.  Classifying free-text triage chief complaints into syndromic categories with natural language processing.

Authors:  Wendy W Chapman; Lee M Christensen; Michael M Wagner; Peter J Haug; Oleg Ivanov; John N Dowling; Robert T Olszewski
Journal:  Artif Intell Med       Date:  2005-01       Impact factor: 5.326

5.  Timeliness of emergency department diagnoses for syndromic surveillance.

Authors:  Debbie Travers; Clifton Barnett; Amy Ising; Anna Waller
Journal:  AMIA Annu Symp Proc       Date:  2006

6.  Evaluation of a chief complaint pre-processor for biosurveillance.

Authors:  Debbie Travers; Shiying Wu; Matthew Scholer; Matt Westlake; Anna Waller; Anne-Lyne McCalla
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

7.  Automated tuberculosis detection.

Authors:  G Hripcsak; C A Knirsch; N L Jain; A Pablos-Mendez
Journal:  J Am Med Inform Assoc       Date:  1997 Sep-Oct       Impact factor: 4.497

8.  Classification of emergency department chief complaints into 7 syndromes: a retrospective analysis of 527,228 patients.

Authors:  Wendy W Chapman; John N Dowling; Michael M Wagner
Journal:  Ann Emerg Med       Date:  2005-07-14       Impact factor: 5.721

9.  Fever detection from free-text clinical records for biosurveillance.

Authors:  Wendy W Chapman; John N Dowling; Michael M Wagner
Journal:  J Biomed Inform       Date:  2004-04       Impact factor: 6.317

  9 in total
  15 in total

1.  Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text.

Authors:  David Carrell; Bradley Malin; John Aberdeen; Samuel Bayer; Cheryl Clark; Ben Wellner; Lynette Hirschman
Journal:  J Am Med Inform Assoc       Date:  2012-07-06       Impact factor: 4.497

2.  Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents.

Authors:  K Liu; W W Chapman; G Savova; C G Chute; N Sioutos; R S Crowley
Journal:  Methods Inf Med       Date:  2010-11-08       Impact factor: 2.176

3.  Validation of a Syndromic Case Definition for Detecting Emergency Department Visits Potentially Related to Marijuana.

Authors:  Kathryn DeYoung; Yushiuan Chen; Robert Beum; Michele Askenazi; Cali Zimmerman; Arthur J Davidson
Journal:  Public Health Rep       Date:  2017-06-06       Impact factor: 2.792

4.  ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports.

Authors:  Henk Harkema; John N Dowling; Tyler Thornblade; Wendy W Chapman
Journal:  J Biomed Inform       Date:  2009-05-10       Impact factor: 6.317

5.  Validating a strategy for psychosocial phenotyping using a large corpus of clinical text.

Authors:  Adi V Gundlapalli; Andrew Redd; Marjorie Carter; Guy Divita; Shuying Shen; Miland Palmer; Matthew H Samore
Journal:  J Am Med Inform Assoc       Date:  2013-10-29       Impact factor: 4.497

6.  Evaluation of natural language processing from emergency department computerized medical records for intra-hospital syndromic surveillance.

Authors:  Solweig Gerbier; Olga Yarovaya; Quentin Gicquel; Anne-Laure Millet; Véronique Smaldore; Véronique Pagliaroli; Stefan Darmoni; Marie-Hélène Metzger
Journal:  BMC Med Inform Decis Mak       Date:  2011-07-28       Impact factor: 2.796

7.  Patient, physician, encounter, and billing characteristics predict the accuracy of syndromic surveillance case definitions.

Authors:  Geneviève Cadieux; David L Buckeridge; André Jacques; Michael Libman; Nandini Dendukuri; Robyn Tamblyn
Journal:  BMC Public Health       Date:  2012-03-08       Impact factor: 3.295

8.  Analysis of False Positive Errors of an Acute Respiratory Infection Text Classifier due to Contextual Features.

Authors:  Brett R South; Shuying Shen; Wendy W Chapman; Sylvain Delisle; Matthew H Samore; Adi V Gundlapalli
Journal:  Summit Transl Bioinform       Date:  2010-03-01

9.  Automated detection of influenza-like illness using clinical surveillance markers at a Department of Veterans Affairs Medical Center.

Authors:  Lawrence P Park; Supriya Rao; Scott A Nabity; David Abbott; Joyce Frederick; Christopher W Woods
Journal:  Emerg Health Threats J       Date:  2011-04-20

10.  Identifying influenza-like illness presentation from unstructured general practice clinical narrative using a text classifier rule-based expert system versus a clinical expert.

Authors:  Jayden MacRae; Tom Love; Michael G Baker; Anthony Dowell; Matthew Carnachan; Maria Stubbe; Lynn McBain
Journal:  BMC Med Inform Decis Mak       Date:  2015-10-06       Impact factor: 2.796

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