Literature DB >> 18997326

Crystallization and preliminary neutron diffraction studies of HIV-1 protease cocrystallized with inhibitor KNI-272.

Hiroyoshi Matsumura1, Motoyasu Adachi, Shigeru Sugiyama, Shino Okada, Megumi Yamakami, Taro Tamada, Koushi Hidaka, Yoshio Hayashi, Tooru Kimura, Yoshiaki Kiso, Tomoya Kitatani, Sho Maki, Hiroshi Y Yoshikawa, Hiroaki Adachi, Kazufumi Takano, Satoshi Murakami, Tsuyoshi Inoue, Ryota Kuroki, Yusuke Mori.   

Abstract

This paper reports the crystallization and preliminary neutron diffraction measurements of HIV-1 protease, a potential target for anti-HIV therapy, complexed with an inhibitor (KNI-272). The aim of this neutron diffraction study is to obtain structural information about the H atoms and to determine the protonation states of the residues within the active site. The crystal was grown to a size of 1.4 mm(3) by repeated macroseeding and a slow-cooling method using a two-liquid system. Neutron diffraction data were collected at room temperature using a BIX-4 diffractometer at the JRR-3 research reactor of the Japan Atomic Energy Agency (JAEA). The data set was integrated and scaled to 2.3 A resolution in space group P2(1)2(1)2, with unit-cell parameters a = 59.5, b = 87.4, c = 46.8 A.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18997326      PMCID: PMC2581681          DOI: 10.1107/S1744309108029679

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Timing the ancestor of the HIV-1 pandemic strains.

Authors:  B Korber; M Muldoon; J Theiler; F Gao; R Gupta; A Lapedes; B H Hahn; S Wolinsky; T Bhattacharya
Journal:  Science       Date:  2000-06-09       Impact factor: 47.728

Review 2.  HIV-1 protease: mechanism and drug discovery.

Authors:  Ashraf Brik; Chi-Huey Wong
Journal:  Org Biomol Chem       Date:  2003-01-07       Impact factor: 3.876

3.  Application of a two-liquid system to sitting-drop vapour-diffusion protein crystallization.

Authors:  Hiroaki Adachi; Kazufumi Takano; Masaaki Morikawa; Shigenori Kanaya; Masashi Yoshimura; Yusuke Mori; Takatomo Sasaki
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19

Review 4.  AIDS as a zoonosis: scientific and public health implications.

Authors:  B H Hahn; G M Shaw; K M De Cock; P M Sharp
Journal:  Science       Date:  2000-01-28       Impact factor: 47.728

5.  Large scale purification and refolding of HIV-1 protease from Escherichia coli inclusion bodies.

Authors:  J O Hui; A G Tomasselli; I M Reardon; J M Lull; D P Brunner; C S Tomich; R L Heinrikson
Journal:  J Protein Chem       Date:  1993-06

Review 6.  Design and synthesis of substrate-based peptidomimetic human immunodeficiency virus protease inhibitors containing the hydroxymethylcarbonyl isostere.

Authors:  Y Kiso
Journal:  Biopolymers       Date:  1996       Impact factor: 2.505

7.  Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes.

Authors:  F Gao; E Bailes; D L Robertson; Y Chen; C M Rodenburg; S F Michael; L B Cummins; L O Arthur; M Peeters; G M Shaw; P M Sharp; B H Hahn
Journal:  Nature       Date:  1999-02-04       Impact factor: 49.962

8.  In vitro anti-human immunodeficiency virus (HIV) activities of transition state mimetic HIV protease inhibitors containing allophenylnorstatine.

Authors:  S Kageyama; T Mimoto; Y Murakawa; M Nomizu; H Ford; T Shirasaka; S Gulnik; J Erickson; K Takada; H Hayashi
Journal:  Antimicrob Agents Chemother       Date:  1993-04       Impact factor: 5.191

9.  Structure of HIV-1 protease with KNI-272, a tight-binding transition-state analog containing allophenylnorstatine.

Authors:  E T Baldwin; T N Bhat; S Gulnik; B Liu; I A Topol; Y Kiso; T Mimoto; H Mitsuya; J W Erickson
Journal:  Structure       Date:  1995-06-15       Impact factor: 5.006

10.  A new neutron single-crystal diffractometer dedicated for biological macromolecules (BIX-4).

Authors:  Kazuo Kurihara; Ichiro Tanaka; Nobuo Niimura; Muhammad Refai Muslih; Andreas Ostermann
Journal:  J Synchrotron Radiat       Date:  2003-11-28       Impact factor: 2.616

View more
  2 in total

1.  Structure of HIV-1 protease in complex with potent inhibitor KNI-272 determined by high-resolution X-ray and neutron crystallography.

Authors:  Motoyasu Adachi; Takashi Ohhara; Kazuo Kurihara; Taro Tamada; Eijiro Honjo; Nobuo Okazaki; Shigeki Arai; Yoshinari Shoyama; Kaname Kimura; Hiroyoshi Matsumura; Shigeru Sugiyama; Hiroaki Adachi; Kazufumi Takano; Yusuke Mori; Koushi Hidaka; Tooru Kimura; Yoshio Hayashi; Yoshiaki Kiso; Ryota Kuroki
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-09       Impact factor: 11.205

2.  Approach for growth of high-quality and large protein crystals.

Authors:  Hiroyoshi Matsumura; Shigeru Sugiyama; Mika Hirose; Keisuke Kakinouchi; Mihoko Maruyama; Ryota Murai; Hiroaki Adachi; Kazufumi Takano; Satoshi Murakami; Yusuke Mori; Tsuyoshi Inoue
Journal:  J Synchrotron Radiat       Date:  2010-11-05       Impact factor: 2.616

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.