Literature DB >> 18989019

Invariant crease lines for topological and structural analysis of tensor fields.

Xavier Tricoche1, Gordon Kindlmann, Carl-Fredrik Westin.   

Abstract

We introduce a versatile framework for characterizing and extracting salient structures in three-dimensional symmetric second-order tensor fields. The key insight is that degenerate lines in tensor fields, as defined by the standard topological approach, are exactly crease (ridge and valley) lines of a particular tensor invariant called mode. This reformulation allows us to apply well-studied approaches from scientific visualization or computer vision to the extraction of topological lines in tensor fields. More generally, this main result suggests that other tensor invariants, such as anisotropy measures like fractional anisotropy (FA), can be used in the same framework in lieu of mode to identify important structural properties in tensor fields. Our implementation addresses the specific challenge posed by the non-linearity of the considered scalar measures and by the smoothness requirement of the crease manifold computation. We use a combination of smooth reconstruction kernels and adaptive refinement strategy that automatically adjust the resolution of the analysis to the spatial variation of the considered quantities. Together, these improvements allow for the robust application of existing ridge line extraction algorithms in the tensor context of our problem. Results are proposed for a diffusion tensor MRI dataset, and for a benchmark stress tensor field used in engineering research.

Entities:  

Year:  2008        PMID: 18989019      PMCID: PMC2743867          DOI: 10.1109/TVCG.2008.148

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  9 in total

1.  Medial-node models to identify and measure objects in real-time 3-D echocardiography.

Authors:  G D Stetten; S M Pizer
Journal:  IEEE Trans Med Imaging       Date:  1999-10       Impact factor: 10.048

2.  A continuous tensor field approximation of discrete DT-MRI data for extracting microstructural and architectural features of tissue.

Authors:  Sinisa Pajevic; Akram Aldroubi; Peter J Basser
Journal:  J Magn Reson       Date:  2002-01       Impact factor: 2.229

3.  Topological lines in 3D tensor fields and discriminant Hessian factorization.

Authors:  Xiaoqiang Zheng; Beresford N Parlett; Alex Pang
Journal:  IEEE Trans Vis Comput Graph       Date:  2005 Jul-Aug       Impact factor: 4.579

4.  Orthogonal tensor invariants and the analysis of diffusion tensor magnetic resonance images.

Authors:  Daniel B Ennis; Gordon Kindlmann
Journal:  Magn Reson Med       Date:  2006-01       Impact factor: 4.668

5.  Anisotropy creases delineate white matter structure in diffusion tensor MRI.

Authors:  Gordon Kindlmann; Xavier Tricoche; Carl-Fredrik Westin
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

6.  Efficient visualization of lagrangian coherent structures by filtered AMR ridge extraction.

Authors:  Filip Sadlo; Ronald Peikert
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

7.  Topological visualization of brain diffusion MRI data.

Authors:  Thomas Schultz; Holger Theisel; Hans-Peter Seidel
Journal:  IEEE Trans Vis Comput Graph       Date:  2007 Nov-Dec       Impact factor: 4.579

8.  Delineating white matter structure in diffusion tensor MRI with anisotropy creases.

Authors:  Gordon Kindlmann; Xavier Tricoche; Carl-Fredrik Westin
Journal:  Med Image Anal       Date:  2007-08-03       Impact factor: 8.545

9.  Microstructural and physiological features of tissues elucidated by quantitative-diffusion-tensor MRI.

Authors:  P J Basser; C Pierpaoli
Journal:  J Magn Reson B       Date:  1996-06
  9 in total
  2 in total

1.  Sampling and visualizing creases with scale-space particles.

Authors:  Gordon L Kindlmann; Raúl San José Estépar; Stephen M Smith; Carl-Fredrik Westin
Journal:  IEEE Trans Vis Comput Graph       Date:  2009 Nov-Dec       Impact factor: 4.579

Review 2.  Dancing Styles of Collective Cell Migration: Image-Based Computational Analysis of JRAB/MICAL-L2.

Authors:  Ayuko Sakane; Shin Yoshizawa; Hideo Yokota; Takuya Sasaki
Journal:  Front Cell Dev Biol       Date:  2018-02-05
  2 in total

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