Literature DB >> 18982583

Computational pathology analysis of tissue microarrays predicts survival of renal clear cell carcinoma patients.

Thomas J Fuchs1, Peter J Wild, Holger Moch, Joachim M Buhmann.   

Abstract

Renal cell carcinoma (RCC) can be diagnosed by histological tissue analysis where exact counts of cancerous cell nuclei are required. We propose a completely automated image analysis pipeline to predict the survival of RCC patients based on the analysis of immunohistochemical staining of MIB-1 on tissue microarrays. A random forest classifier detects cell nuclei of cancerous cells and predicts their staining. The classifier training is achieved by expert annotations of 2300 nuclei gathered from tissues of 9 different RCC patients. The application to a test set of 133 patients clearly demonstrates that our computational pathology analysis matches the prognostic performance of expert pathologists.

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Year:  2008        PMID: 18982583     DOI: 10.1007/978-3-540-85990-1_1

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  21 in total

1.  Localization of Diagnostically Relevant Regions of Interest in Whole Slide Images: a Comparative Study.

Authors:  Ezgi Mercan; Selim Aksoy; Linda G Shapiro; Donald L Weaver; Tad T Brunyé; Joann G Elmore
Journal:  J Digit Imaging       Date:  2016-08       Impact factor: 4.056

Review 2.  Multiscale integration of -omic, imaging, and clinical data in biomedical informatics.

Authors:  John H Phan; Chang F Quo; Chihwen Cheng; May Dongmei Wang
Journal:  IEEE Rev Biomed Eng       Date:  2012

Review 3.  Recent Advances of Deep Learning for Computational Histopathology: Principles and Applications.

Authors:  Yawen Wu; Michael Cheng; Shuo Huang; Zongxiang Pei; Yingli Zuo; Jianxin Liu; Kai Yang; Qi Zhu; Jie Zhang; Honghai Hong; Daoqiang Zhang; Kun Huang; Liang Cheng; Wei Shao
Journal:  Cancers (Basel)       Date:  2022-02-25       Impact factor: 6.639

4.  Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows.

Authors:  Jeremias Gomes; Willian Barreiros; Tahsin Kurc; Alba C M A Melo; Jun Kong; Joel H Saltz; George Teodoro
Journal:  Comput Biol Med       Date:  2019-03-13       Impact factor: 4.589

5.  Evaluation of hepatic tumor response to yttrium-90 radioembolization therapy using texture signatures generated from contrast-enhanced CT images.

Authors:  Rebekah H Gensure; David J Foran; Vincent M Lee; Vyacheslav M Gendel; Salma K Jabbour; Darren R Carpizo; John L Nosher; Lin Yang
Journal:  Acad Radiol       Date:  2012-07-26       Impact factor: 3.173

6.  A caGRID-ENABLED, LEARNING BASED IMAGE SEGMENTATION METHOD FOR HISTOPATHOLOGY SPECIMENS.

Authors:  David J Foran; Lin Yang; Oncel Tuzel; Wenjin Chen; Jun Hu; Tahsin M Kurc; Renato Ferreira; Joel H Saltz
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009-07-01

Review 7.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

8.  Automatic tumor-stroma separation in fluorescence TMAs enables the quantitative high-throughput analysis of multiple cancer biomarkers.

Authors:  Bernd Lahrmann; Niels Halama; Hans-Peter Sinn; Peter Schirmacher; Dirk Jaeger; Niels Grabe
Journal:  PLoS One       Date:  2011-12-02       Impact factor: 3.240

9.  Estimation of immune cell densities in immune cell conglomerates: an approach for high-throughput quantification.

Authors:  Niels Halama; Inka Zoernig; Anna Spille; Kathi Westphal; Peter Schirmacher; Dirk Jaeger; Niels Grabe
Journal:  PLoS One       Date:  2009-11-16       Impact factor: 3.240

10.  TMARKER: A free software toolkit for histopathological cell counting and staining estimation.

Authors:  Peter J Schüffler; Thomas J Fuchs; Cheng Soon Ong; Peter J Wild; Niels J Rupp; Joachim M Buhmann
Journal:  J Pathol Inform       Date:  2013-03-30
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