Literature DB >> 18979823

Automatic image analysis of histopathology specimens using concave vertex graph.

Lin Yang1, Oncel Tuzel, Peter Meer, David J Foran.   

Abstract

Automatic image analysis of histopathology specimens would help the early detection of blood cancer. The first step for automatic image analysis is segmentation. However, touching cells bring the difficulty for traditional segmentation algorithms. In this paper, we propose a novel algorithm which can reliably handle touching cells segmentation. Robust estimation and color active contour models are used to delineate the outer boundary. Concave points on the boundary and inner edges are automatically detected. A concave vertex graph is constructed from these points and edges. By minimizing a cost function based on morphological characteristics, we recursively calculate the optimal path in the graph to separate the touching cells. The algorithm is computationally efficient and has been tested on two large clinical dataset which contain 207 images and 3898 images respectively. Our algorithm provides better results than other studies reported in the recent literature.

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Year:  2008        PMID: 18979823      PMCID: PMC3683135          DOI: 10.1007/978-3-540-85988-8_99

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  6 in total

1.  Improved watershed transform for medical image segmentation using prior information.

Authors:  V Grau; A U J Mewes; M Alcañiz; R Kikinis; S K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2004-04       Impact factor: 10.048

2.  Unsupervised segmentation based on robust estimation and color active contour models.

Authors:  Lin Yang; Peter Meer; David J Foran
Journal:  IEEE Trans Inf Technol Biomed       Date:  2005-09

3.  Multi-resolution vessel segmentation using normalized cuts in retinal images.

Authors:  Wenchao Cai; Albert C S Chung
Journal:  Med Image Comput Comput Assist Interv       Date:  2006

Review 4.  Chronic lymphocytic leukemia.

Authors:  C Rozman; E Montserrat
Journal:  N Engl J Med       Date:  1995-10-19       Impact factor: 91.245

5.  Ecological statistics of Gestalt laws for the perceptual organization of contours.

Authors:  James H Elder; Richard M Goldberg
Journal:  J Vis       Date:  2002       Impact factor: 2.240

Review 6.  Coherent view of non-Hodgkin's lymphoma.

Authors:  A C Aisenberg
Journal:  J Clin Oncol       Date:  1995-10       Impact factor: 44.544

  6 in total
  14 in total

1.  Robust segmentation of overlapping cells in histopathology specimens using parallel seed detection and repulsive level set.

Authors:  Xin Qi; Fuyong Xing; David J Foran; Lin Yang
Journal:  IEEE Trans Biomed Eng       Date:  2011-12-09       Impact factor: 4.538

2.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

3.  Automatic Myonuclear Detection in Isolated Single Muscle Fibers Using Robust Ellipse Fitting and Sparse Representation.

Authors:  Hai Su; Fuyong Xing; Jonah D Lee; Charlotte A Peterson; Lin Yang
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2014 Jul-Aug       Impact factor: 3.710

4.  Efficient and robust cell detection: A structured regression approach.

Authors:  Yuanpu Xie; Fuyong Xing; Xiaoshuang Shi; Xiangfei Kong; Hai Su; Lin Yang
Journal:  Med Image Anal       Date:  2017-07-26       Impact factor: 8.545

5.  A fast, automatic segmentation algorithm for locating and delineating touching cell boundaries in imaged histopathology.

Authors:  X Qi; F Xing; D J Foran; L Yang
Journal:  Methods Inf Med       Date:  2012-04-18       Impact factor: 2.176

6.  Robust Cell Segmentation for Histological Images of Glioblastoma.

Authors:  Jun Kong; Pengyue Zhang; Yanhui Liang; George Teodoro; Daniel J Brat; Fusheng Wang
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2016-06-16

7.  PathMiner: a Web-based tool for computer-assisted diagnostics in pathology.

Authors:  Lin Yang; Oncel Tuzel; Wenjin Chen; Peter Meer; Gratian Salaru; Lauri A Goodell; David J Foran
Journal:  IEEE Trans Inf Technol Biomed       Date:  2009-01-20

Review 8.  Robust Nucleus/Cell Detection and Segmentation in Digital Pathology and Microscopy Images: A Comprehensive Review.

Authors:  Fuyong Xing; Lin Yang
Journal:  IEEE Rev Biomed Eng       Date:  2016-01-06

9.  A Framework for 3D Vessel Analysis using Whole Slide Images of Liver Tissue Sections.

Authors:  Yanhui Liang; Fusheng Wang; Darren Treanor; Derek Magee; Nick Roberts; George Teodoro; Yangyang Zhu; Jun Kong
Journal:  Int J Comput Biol Drug Des       Date:  2016

10.  Segmentation of the Clustered Cells with Optimized Boundary Detection in Negative Phase Contrast Images.

Authors:  Yuliang Wang; Zaicheng Zhang; Huimin Wang; Shusheng Bi
Journal:  PLoS One       Date:  2015-06-12       Impact factor: 3.240

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