Literature DB >> 18979729

Tracking the swimming motions of C. elegans worms with applications in aging studies.

Christophe Restif1, Dimitris Metaxas.   

Abstract

Quantitative analysis of the swimming motions of C. elegans worms are of critical importance for many gene-related studies on aging. However no automated methods are currently in use. We present a novel training-based method that automatically tracks and segments multiple swimming worms, in challenging imaging conditions. The position of each worm is predicted by comparing its latest motion with a set of previous observations, and then adjusted laterally and longitudinally to fit the image. After segmentation, a variety of measures can be used to assess the evolution of swimming patterns over time, allowing a quantitative comparison of worm populations over their lifetime. The complete software is being evaluated for mass processing in biology laboratories.

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Year:  2008        PMID: 18979729     DOI: 10.1007/978-3-540-85988-8_5

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  7 in total

1.  Morphology-guided graph search for untangling objects: C. elegans analysis.

Authors:  Tammy Riklin Raviv; V Ljosa; A L Conery; F M Ausubel; A E Carpenter; P Golland; C Wählby
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

2.  Measuring oxidative stress resistance of Caenorhabditis elegans in 96-well microtiter plates.

Authors:  Elite Possik; Arnim Pause
Journal:  J Vis Exp       Date:  2015-05-09       Impact factor: 1.355

Review 3.  High-throughput screening and small animal models, where are we?

Authors:  Jean Giacomotto; Laurent Ségalat
Journal:  Br J Pharmacol       Date:  2010-05       Impact factor: 8.739

4.  Novel EGF pathway regulators modulate C. elegans healthspan and lifespan via EGF receptor, PLC-gamma, and IP3R activation.

Authors:  Hiroaki Iwasa; Simon Yu; Jian Xue; Monica Driscoll
Journal:  Aging Cell       Date:  2010-05-22       Impact factor: 9.304

5.  Fast, automated measurement of nematode swimming (thrashing) without morphometry.

Authors:  Steven D Buckingham; David B Sattelle
Journal:  BMC Neurosci       Date:  2009-07-20       Impact factor: 3.288

6.  AutoEPG: software for the analysis of electrical activity in the microcircuit underpinning feeding behaviour of Caenorhabditis elegans.

Authors:  James Dillon; Ioannis Andrianakis; Kate Bull; Steve Glautier; Vincent O'Connor; Lindy Holden-Dye; Christopher James
Journal:  PLoS One       Date:  2009-12-29       Impact factor: 3.240

7.  CeleST: computer vision software for quantitative analysis of C. elegans swim behavior reveals novel features of locomotion.

Authors:  Christophe Restif; Carolina Ibáñez-Ventoso; Mehul M Vora; Suzhen Guo; Dimitris Metaxas; Monica Driscoll
Journal:  PLoS Comput Biol       Date:  2014-07-17       Impact factor: 4.475

  7 in total

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