Literature DB >> 18974343

Structural insights into a circadian oscillator.

Carl Hirschie Johnson1, Martin Egli, Phoebe L Stewart.   

Abstract

An endogenous circadian system in cyanobacteria exerts pervasive control over cellular processes, including global gene expression. Indeed, the entire chromosome undergoes daily cycles of topological changes and compaction. The biochemical machinery underlying a circadian oscillator can be reconstituted in vitro with just three cyanobacterial proteins, KaiA, KaiB, and KaiC. These proteins interact to promote conformational changes and phosphorylation events that determine the phase of the in vitro oscillation. The high-resolution structures of these proteins suggest a ratcheting mechanism by which the KaiABC oscillator ticks unidirectionally. This posttranslational oscillator may interact with transcriptional and translational feedback loops to generate the emergent circadian behavior in vivo. The conjunction of structural, biophysical, and biochemical approaches to this system reveals molecular mechanisms of biological timekeeping.

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Year:  2008        PMID: 18974343      PMCID: PMC2588432          DOI: 10.1126/science.1150451

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  40 in total

1.  cpmA, a gene involved in an output pathway of the cyanobacterial circadian system.

Authors:  M Katayama; N F Tsinoremas; T Kondo; S S Golden
Journal:  J Bacteriol       Date:  1999-06       Impact factor: 3.490

2.  Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm.

Authors:  Kenichi Hitomi; Tokitaka Oyama; Seungil Han; Andrew S Arvai; Elizabeth D Getzoff
Journal:  J Biol Chem       Date:  2005-02-16       Impact factor: 5.157

3.  No transcription-translation feedback in circadian rhythm of KaiC phosphorylation.

Authors:  Jun Tomita; Masato Nakajima; Takao Kondo; Hideo Iwasaki
Journal:  Science       Date:  2004-11-18       Impact factor: 47.728

4.  Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro.

Authors:  Masato Nakajima; Keiko Imai; Hiroshi Ito; Taeko Nishiwaki; Yoriko Murayama; Hideo Iwasaki; Tokitaka Oyama; Takao Kondo
Journal:  Science       Date:  2005-04-15       Impact factor: 47.728

5.  Testing the adaptive value of circadian systems.

Authors:  Carl Hirschie Johnson
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

6.  Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours.

Authors:  T Mori; B Binder; C H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1996-09-17       Impact factor: 11.205

7.  Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria.

Authors:  M Ishiura; S Kutsuna; S Aoki; H Iwasaki; C R Andersson; A Tanabe; S S Golden; C H Johnson; T Kondo
Journal:  Science       Date:  1998-09-04       Impact factor: 47.728

8.  Circadian rhythms in rapidly dividing cyanobacteria.

Authors:  T Kondo; T Mori; N V Lebedeva; S Aoki; M Ishiura; S S Golden
Journal:  Science       Date:  1997-01-10       Impact factor: 47.728

9.  Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942.

Authors:  Taeko Nishiwaki; Yoshinori Satomi; Masato Nakajima; Cheolju Lee; Reiko Kiyohara; Hakuto Kageyama; Yohko Kitayama; Mioko Temamoto; Akihiro Yamaguchi; Atsushi Hijikata; Mitiko Go; Hideo Iwasaki; Toshifumi Takao; Takao Kondo
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-03       Impact factor: 11.205

10.  Circadian rhythms in prokaryotes: luciferase as a reporter of circadian gene expression in cyanobacteria.

Authors:  T Kondo; C A Strayer; R D Kulkarni; W Taylor; M Ishiura; S S Golden; C H Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

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  42 in total

1.  Intermolecular associations determine the dynamics of the circadian KaiABC oscillator.

Authors:  Ximing Qin; Mark Byrne; Tetsuya Mori; Ping Zou; Dewight R Williams; Hassane McHaourab; Carl Hirschie Johnson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-02       Impact factor: 11.205

2.  Analysis of kinetic intermediates in single-particle dwell-time distributions.

Authors:  Daniel L Floyd; Stephen C Harrison; Antoine M van Oijen
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

3.  Robust circadian clocks from coupled protein-modification and transcription-translation cycles.

Authors:  David Zwicker; David K Lubensky; Pieter Rein ten Wolde
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-13       Impact factor: 11.205

4.  Chlamydomonas reinhardtii: duration of its cell cycle and phases at growth rates affected by light intensity.

Authors:  Milada Vítová; Kateřina Bišová; Dáša Umysová; Monika Hlavová; Shigeyuki Kawano; Vilém Zachleder; Mária Cížková
Journal:  Planta       Date:  2010-10-05       Impact factor: 4.116

5.  Dephosphorylation of the core clock protein KaiC in the cyanobacterial KaiABC circadian oscillator proceeds via an ATP synthase mechanism.

Authors:  Martin Egli; Tetsuya Mori; Rekha Pattanayek; Yao Xu; Ximing Qin; Carl H Johnson
Journal:  Biochemistry       Date:  2012-02-13       Impact factor: 3.162

Review 6.  Timing the day: what makes bacterial clocks tick?

Authors:  Carl Hirschie Johnson; Chi Zhao; Yao Xu; Tetsuya Mori
Journal:  Nat Rev Microbiol       Date:  2017-02-20       Impact factor: 60.633

7.  Oscillatory growth in lily pollen tubes does not require aerobic energy metabolism.

Authors:  Caleb M Rounds; Peter K Hepler; Sasha J Fuller; Lawrence J Winship
Journal:  Plant Physiol       Date:  2009-12-09       Impact factor: 8.340

Review 8.  The molecular clockwork of a protein-based circadian oscillator.

Authors:  Joseph S Markson; Erin K O'Shea
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

9.  Nature of KaiB-KaiC binding in the cyanobacterial circadian oscillator.

Authors:  Rekha Pattanayek; Kirthi Kiran Yadagiri; Melanie D Ohi; Martin Egli
Journal:  Cell Cycle       Date:  2013-02-06       Impact factor: 4.534

10.  An arginine tetrad as mediator of input-dependent and input-independent ATPases in the clock protein KaiC.

Authors:  Rekha Pattanayek; Yao Xu; Aashish Lamichhane; Carl H Johnson; Martin Egli
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-04-30
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