Literature DB >> 18973837

Transcriptional networks in root cell fate specification.

Anjali S Iyer-Pascuzzi1, Philip N Benfey.   

Abstract

Cell fate in the Arabidopsis root is determined by positional information mediated by plant hormones and interpreted by transcriptional networks. In this review, we summarize recent advances in our understanding of the regulatory networks that control cell fate within the root meristem, and in the interplay of these networks with phytohormones. Recent work describing the importance of chromatin organization in tissue patterning is also highlighted. A new, high resolution root expression map detailing the transciptome of nearly all cell types in the Arabidopsis root across developmental timepoints will provide a framework for understanding these networks.

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Year:  2008        PMID: 18973837      PMCID: PMC2691893          DOI: 10.1016/j.bbagrm.2008.09.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  120 in total

Review 1.  Shoot apical meristem maintenance: the art of a dynamic balance.

Authors:  Cristel C Carles; Jennifer C Fletcher
Journal:  Trends Plant Sci       Date:  2003-08       Impact factor: 18.313

2.  The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.

Authors:  L Di Laurenzio; J Wysocka-Diller; J E Malamy; L Pysh; Y Helariutta; G Freshour; M G Hahn; K A Feldmann; P N Benfey
Journal:  Cell       Date:  1996-08-09       Impact factor: 41.582

3.  Root-specific CLE19 overexpression and the sol1/2 suppressors implicate a CLV-like pathway in the control of Arabidopsis root meristem maintenance.

Authors:  Eva Casamitjana-Martínez; Hugo F Hofhuis; Jian Xu; Chun-Ming Liu; Renze Heidstra; Ben Scheres
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

4.  A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis.

Authors:  Fan Zhang; Antonio Gonzalez; Mingzhe Zhao; C Thomas Payne; Alan Lloyd
Journal:  Development       Date:  2003-08-13       Impact factor: 6.868

5.  The type-A response regulator, ARR15, acts as a negative regulator in the cytokinin-mediated signal transduction in Arabidopsis thaliana.

Authors:  Takatoshi Kiba; Hisami Yamada; Shusei Sato; Tomohiko Kato; Satoshi Tabata; Takafumi Yamashino; Takeshi Mizuno
Journal:  Plant Cell Physiol       Date:  2003-08       Impact factor: 4.927

6.  Loss of CLE40, a protein functionally equivalent to the stem cell restricting signal CLV3, enhances root waving in Arabidopsis.

Authors:  Martin Hobe; Ralf Müller; Margit Grünewald; Ulrike Brand; Rüdiger Simon
Journal:  Dev Genes Evol       Date:  2003-05-13       Impact factor: 0.900

7.  The GLABRA2 gene encodes a homeo domain protein required for normal trichome development in Arabidopsis.

Authors:  W G Rerie; K A Feldmann; M D Marks
Journal:  Genes Dev       Date:  1994-06-15       Impact factor: 11.361

8.  The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root.

Authors:  M E Galway; J D Masucci; A M Lloyd; V Walbot; R W Davis; J W Schiefelbein
Journal:  Dev Biol       Date:  1994-12       Impact factor: 3.582

9.  The homeobox gene GLABRA2 is required for position-dependent cell differentiation in the root epidermis of Arabidopsis thaliana.

Authors:  J D Masucci; W G Rerie; D R Foreman; M Zhang; M E Galway; M D Marks; J W Schiefelbein
Journal:  Development       Date:  1996-04       Impact factor: 6.868

10.  Root development in Arabidopsis: four mutants with dramatically altered root morphogenesis.

Authors:  P N Benfey; P J Linstead; K Roberts; J W Schiefelbein; M T Hauser; R A Aeschbacher
Journal:  Development       Date:  1993-09       Impact factor: 6.868

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  12 in total

1.  A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Authors:  Sandrine Ruffel; Gabriel Krouk; Gloria M Coruzzi
Journal:  Plant Physiol       Date:  2009-11-25       Impact factor: 8.340

2.  A developmental framework for endodermal differentiation and polarity.

Authors:  Julien Alassimone; Sadaf Naseer; Niko Geldner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-08       Impact factor: 11.205

Review 3.  Cell type-specific transcriptional profiling: implications for metabolite profiling.

Authors:  Eric D Rogers; Terry Jackson; Arieh Moussaieff; Asaph Aharoni; Philip N Benfey
Journal:  Plant J       Date:  2012-04       Impact factor: 6.417

Review 4.  Regulatory networks controlling the development of the root system and the formation of lateral roots: a comparative analysis of the roles of pericycle and vascular cambium.

Authors:  Donato Chiatante; Thomas Rost; John Bryant; Gabriella Stefania Scippa
Journal:  Ann Bot       Date:  2018-11-03       Impact factor: 4.357

5.  ER-resident proteins PDR2 and LPR1 mediate the developmental response of root meristems to phosphate availability.

Authors:  Carla A Ticconi; Rocco D Lucero; Siriwat Sakhonwasee; Aaron W Adamson; Audrey Creff; Laurent Nussaume; Thierry Desnos; Steffen Abel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-07       Impact factor: 11.205

6.  SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis.

Authors:  Tom Bennett; Albert van den Toorn; Gabino F Sanchez-Perez; Ana Campilho; Viola Willemsen; Berend Snel; Ben Scheres
Journal:  Plant Cell       Date:  2010-03-02       Impact factor: 11.277

7.  Multiple facets of Arabidopsis seedling development require indole-3-butyric acid-derived auxin.

Authors:  Lucia C Strader; Dorthea L Wheeler; Sarah E Christensen; John C Berens; Jerry D Cohen; Rebekah A Rampey; Bonnie Bartel
Journal:  Plant Cell       Date:  2011-03-15       Impact factor: 11.277

8.  Single-cell and coupled GRN models of cell patterning in the Arabidopsis thaliana root stem cell niche.

Authors:  Eugenio Azpeitia; Mariana Benítez; Iliusi Vega; Carlos Villarreal; Elena R Alvarez-Buylla
Journal:  BMC Syst Biol       Date:  2010-10-05

Review 9.  The stem cell--chromatin connection.

Authors:  Yi Sang; Miin-Feng Wu; Doris Wagner
Journal:  Semin Cell Dev Biol       Date:  2009-09-16       Impact factor: 7.727

Review 10.  Roles for IBA-derived auxin in plant development.

Authors:  Elizabeth M Frick; Lucia C Strader
Journal:  J Exp Bot       Date:  2018-01-04       Impact factor: 6.992

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