Literature DB >> 18957431

Chromatin remodeling in the noncoding repeat expansion diseases.

Daman Kumari1, Karen Usdin.   

Abstract

Friedreich ataxia, myotonic dystrophy type 1 and 3 forms of intellectual disability, fragile X syndrome, FRAXE mental retardation, and FRA12A mental retardation are repeat expansion diseases caused by expansion of CTG.CAG, GAA.TTC, or CGG.CCG repeat tracts. These repeats are transcribed but not translated. They are located in different parts of different genes and cause symptoms that range from ataxia and hypertrophic cardiomyopathy to muscle wasting, male infertility, and mental retardation, yet recent reports suggest that, despite these differences, the repeats may share a common property, namely the ability to initiate repeat-mediated epigenetic changes that result in heterochromatin formation.

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Year:  2008        PMID: 18957431      PMCID: PMC2658035          DOI: 10.1074/jbc.R800026200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  41 in total

1.  SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.

Authors:  David C Schultz; Kasirajan Ayyanathan; Dmitri Negorev; Gerd G Maul; Frank J Rauscher
Journal:  Genes Dev       Date:  2002-04-15       Impact factor: 11.361

2.  The fragile X syndrome repeats form RNA hairpins that do not activate the interferon-inducible protein kinase, PKR, but are cut by Dicer.

Authors:  Vaishali Handa; Tapas Saha; Karen Usdin
Journal:  Nucleic Acids Res       Date:  2003-11-01       Impact factor: 16.971

Review 3.  Rare fragile sites.

Authors:  G R Sutherland
Journal:  Cytogenet Genome Res       Date:  2003       Impact factor: 1.636

4.  CTCF-binding sites flank CTG/CAG repeats and form a methylation-sensitive insulator at the DM1 locus.

Authors:  G N Filippova; C P Thienes; B H Penn; D H Cho; Y J Hu; J M Moore; T R Klesert; V V Lobanenkov; S J Tapscott
Journal:  Nat Genet       Date:  2001-08       Impact factor: 38.330

5.  A complex containing at least one zinc dependent HeLa nuclear protein binds to the intronic (gaa)(n) block of the frataxin gene.

Authors:  W Mäueler; G Bassili; C Hardt; H G Keyl; J T Epplen
Journal:  Gene       Date:  2001-05-30       Impact factor: 3.688

6.  The GAA*TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner.

Authors:  E Grabczyk; K Usdin
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

7.  DNA triplet repeats mediate heterochromatin-protein-1-sensitive variegated gene silencing.

Authors:  Alexander Saveliev; Christopher Everett; Tammy Sharpe; Zoë Webster; Richard Festenstein
Journal:  Nature       Date:  2003-04-24       Impact factor: 49.962

8.  Hairpin formation in Friedreich's ataxia triplet repeat expansion.

Authors:  Brooke L Heidenfelder; Alexander M Makhov; Michael D Topal
Journal:  J Biol Chem       Date:  2002-11-18       Impact factor: 5.157

9.  Developmental study of fragile X syndrome using human embryonic stem cells derived from preimplantation genetically diagnosed embryos.

Authors:  Rachel Eiges; Achia Urbach; Mira Malcov; Tsvia Frumkin; Tamar Schwartz; Ami Amit; Yuval Yaron; Amir Eden; Ofra Yanuka; Nissim Benvenisty; Dalit Ben-Yosef
Journal:  Cell Stem Cell       Date:  2007-11       Impact factor: 24.633

10.  Effects of triplet repeat sequences on nucleosome positioning and gene expression in yeast minichromosomes.

Authors:  Nobuyuki Tomita; Ryo Fujita; Daichi Kurihara; Heisaburo Shindo; Robert D Wells; Mitsuhiro Shimizu
Journal:  Nucleic Acids Res Suppl       Date:  2002
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  29 in total

Review 1.  Epigenetics in nucleotide repeat expansion disorders.

Authors:  Fang He; Peter K Todd
Journal:  Semin Neurol       Date:  2012-01-21       Impact factor: 3.420

Review 2.  Epigenetic modifications and human disease.

Authors:  Anna Portela; Manel Esteller
Journal:  Nat Biotechnol       Date:  2010-10       Impact factor: 54.908

3.  Expanded CTG repeat demarcates a boundary for abnormal CpG methylation in myotonic dystrophy patient tissues.

Authors:  Arturo López Castel; Masayuki Nakamori; Stephanie Tomé; David Chitayat; Geneviève Gourdon; Charles A Thornton; Christopher E Pearson
Journal:  Hum Mol Genet       Date:  2010-11-01       Impact factor: 6.150

4.  Getting to the core of repeat expansions by cell reprogramming.

Authors:  Sergei M Mirkin
Journal:  Cell Stem Cell       Date:  2010-11-05       Impact factor: 24.633

Review 5.  Repeat instability during DNA repair: Insights from model systems.

Authors:  Karen Usdin; Nealia C M House; Catherine H Freudenreich
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-01-22       Impact factor: 8.250

Review 6.  Partners in crime: bidirectional transcription in unstable microsatellite disease.

Authors:  Ranjan Batra; Konstantinos Charizanis; Maurice S Swanson
Journal:  Hum Mol Genet       Date:  2010-04-04       Impact factor: 6.150

7.  Identification of restriction endonucleases sensitive to 5-cytosine methylation at non-CpG sites, including expanded (CAG)n/(CTG)n repeats.

Authors:  Arturo López Castel; Masayuki Nakamori; Charles A Thornton; Christopher E Pearson
Journal:  Epigenetics       Date:  2011-04-01       Impact factor: 4.528

Review 8.  Repeat instability as the basis for human diseases and as a potential target for therapy.

Authors:  Arturo López Castel; John D Cleary; Christopher E Pearson
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03       Impact factor: 94.444

Review 9.  Rationale for the development of 2-aminobenzamide histone deacetylase inhibitors as therapeutics for Friedreich ataxia.

Authors:  Elisabetta Soragni; Chunping Xu; Heather L Plasterer; Vincent Jacques; James R Rusche; Joel M Gottesfeld
Journal:  J Child Neurol       Date:  2012-07-04       Impact factor: 1.987

10.  Murine hippocampal neurons expressing Fmr1 gene premutations show early developmental deficits and late degeneration.

Authors:  Yucui Chen; Flora Tassone; Robert F Berman; Paul J Hagerman; Randi J Hagerman; Rob Willemsen; Isaac N Pessah
Journal:  Hum Mol Genet       Date:  2010-01-01       Impact factor: 6.150

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