Literature DB >> 18956896

Water modeled as an intermediate element between carbon and silicon.

Valeria Molinero1, Emily B Moore.   

Abstract

Water and silicon are chemically dissimilar substances with common physical properties. Their liquids display a temperature of maximum density, increased diffusivity on compression, and they form tetrahedral crystals and tetrahedral amorphous phases. The common feature to water, silicon, and carbon is the formation of tetrahedrally coordinated units. We exploit these similarities to develop a coarse-grained model of water (mW) that is essentially an atom with tetrahedrality intermediate between carbon and silicon. mW mimics the hydrogen-bonded structure of water through the introduction of a nonbond angular dependent term that encourages tetrahedral configurations. The model departs from the prevailing paradigm in water modeling: the use of long-ranged forces (electrostatics) to produce short-ranged (hydrogen-bonded) structure. mW has only short-range interactions yet it reproduces the energetics, density and structure of liquid water, and its anomalies and phase transitions with comparable or better accuracy than the most popular atomistic models of water, at less than 1% of the computational cost. We conclude that it is not the nature of the interactions but the connectivity of the molecules that determines the structural and thermodynamic behavior of water. The speedup in computing time provided by mW makes it particularly useful for the study of slow processes in deeply supercooled water, the mechanism of ice nucleation, wetting-drying transitions, and as a realistic water model for coarse-grained simulations of biomolecules and complex materials.

Entities:  

Year:  2009        PMID: 18956896     DOI: 10.1021/jp805227c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  77 in total

1.  Structural transformation in supercooled water controls the crystallization rate of ice.

Authors:  Emily B Moore; Valeria Molinero
Journal:  Nature       Date:  2011-11-23       Impact factor: 49.962

2.  The liquid-liquid phase transition in silicon revealed by snapshots of valence electrons.

Authors:  Martin Beye; Florian Sorgenfrei; William F Schlotter; Wilfried Wurth; Alexander Föhlisch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-30       Impact factor: 11.205

3.  Direct calculation of ice homogeneous nucleation rate for a molecular model of water.

Authors:  Amir Haji-Akbari; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

4.  Ice nucleation at the nanoscale probes no man's land of water.

Authors:  Tianshu Li; Davide Donadio; Giulia Galli
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  Entropy and the driving force for the filling of carbon nanotubes with water.

Authors:  Tod A Pascal; William A Goddard; Yousung Jung
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-27       Impact factor: 11.205

6.  An improved coarse-grained model of solvation and the hydrophobic effect.

Authors:  Patrick Varilly; Amish J Patel; David Chandler
Journal:  J Chem Phys       Date:  2011-02-21       Impact factor: 3.488

7.  Ions increase strength of hydrogen bond in water.

Authors:  Tomaz Urbic
Journal:  Chem Phys Lett       Date:  2014-08-28       Impact factor: 2.328

8.  Direct observation of 2-dimensional ices on different surfaces near room temperature without confinement.

Authors:  Chongqin Zhu; Yurui Gao; Weiduo Zhu; Jian Jiang; Jie Liu; Jianjun Wang; Joseph S Francisco; Xiao Cheng Zeng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-02       Impact factor: 11.205

9.  Coarse-Grained Molecular Models of Water: A Review.

Authors:  Kevin R Hadley; Clare McCabe
Journal:  Mol Simul       Date:  2012-07-04       Impact factor: 2.178

10.  United polarizable multipole water model for molecular mechanics simulation.

Authors:  Rui Qi; Lee-Ping Wang; Qiantao Wang; Vijay S Pande; Pengyu Ren
Journal:  J Chem Phys       Date:  2015-07-07       Impact factor: 3.488

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