Literature DB >> 18954891

A new hybrid system of QSAR models for predicting bioconcentration factors (BCF).

Chunyan Zhao1, Elena Boriani, Antonio Chana, Alessandra Roncaglioni, Emilio Benfenati.   

Abstract

The aim was to develop a reliable and practical quantitative structure-activity relationship (QSAR) model validated by strict conditions for predicting bioconcentration factors (BCF). We built up several QSAR models starting from a large data set of 473 heterogeneous chemicals, based on multiple linear regression (MLR), radial basis function neural network (RBFNN) and support vector machine (SVM) methods. To improve the results, we also applied a hybrid model, which gave better prediction than single models. All models were statistically analysed using strict criteria, including an external test set. The outliers were also examined to understand better in which cases large errors were to be expected and to improve the predictive models. The models offer more robust tools for regulatory purposes, on the basis of the statistical results and the quality check on the input data.

Mesh:

Year:  2008        PMID: 18954891     DOI: 10.1016/j.chemosphere.2008.09.033

Source DB:  PubMed          Journal:  Chemosphere        ISSN: 0045-6535            Impact factor:   7.086


  11 in total

1.  Modeling bioconcentration factor (BCF) using mechanistically interpretable descriptors computed from open source tool "PaDEL-Descriptor".

Authors:  Subrata Pramanik; Kunal Roy
Journal:  Environ Sci Pollut Res Int       Date:  2013-10-30       Impact factor: 4.223

2.  From data point timelines to a well curated data set, data mining of experimental data and chemical structure data from scientific articles, problems and possible solutions.

Authors:  Villu Ruusmann; Uko Maran
Journal:  J Comput Aided Mol Des       Date:  2013-07-25       Impact factor: 3.686

Review 3.  Current mathematical methods used in QSAR/QSPR studies.

Authors:  Peixun Liu; Wei Long
Journal:  Int J Mol Sci       Date:  2009-04-29       Impact factor: 6.208

4.  QSPR Modeling of Bioconcentration Factors of Nonionic Organic Compounds.

Authors:  Omar Deeb; Padmakar V Khadikar; Mohammad Goodarzi
Journal:  Environ Health Insights       Date:  2010-07-06

5.  Assessment and validation of the CAESAR predictive model for bioconcentration factor (BCF) in fish.

Authors:  Anna Lombardo; Alessandra Roncaglioni; Elena Boriani; Chiara Milan; Emilio Benfenati
Journal:  Chem Cent J       Date:  2010-07-29       Impact factor: 4.215

6.  Comparative performance of descriptors in a multiple linear and Kriging models: a case study on the acute toxicity of organic chemicals to algae.

Authors:  Gulcin Tugcu; H Birkan Yilmaz; Melek Türker Saçan
Journal:  Environ Sci Pollut Res Int       Date:  2014-06-21       Impact factor: 4.223

7.  Defining a novel k-nearest neighbours approach to assess the applicability domain of a QSAR model for reliable predictions.

Authors:  Faizan Sahigara; Davide Ballabio; Roberto Todeschini; Viviana Consonni
Journal:  J Cheminform       Date:  2013-05-30       Impact factor: 5.514

8.  An ensemble model of QSAR tools for regulatory risk assessment.

Authors:  Prachi Pradeep; Richard J Povinelli; Shannon White; Stephen J Merrill
Journal:  J Cheminform       Date:  2016-09-22       Impact factor: 5.514

9.  QSAR workbench: automating QSAR modeling to drive compound design.

Authors:  Richard Cox; Darren V S Green; Christopher N Luscombe; Noj Malcolm; Stephen D Pickett
Journal:  J Comput Aided Mol Des       Date:  2013-04-25       Impact factor: 3.686

10.  Statistical relationship between metabolic decomposition and chemical uptake predicts bioconcentration factor data for diverse chemical exposures.

Authors:  Michael A Rowland; Hannah Wear; Karen H Watanabe; Kurt A Gust; Michael L Mayo
Journal:  BMC Syst Biol       Date:  2018-08-07
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