Literature DB >> 18953640

The road to the crystal structure of the cytochrome bc1 complex from the anoxigenic, photosynthetic bacterium Rhodobacter sphaeroides.

Di Xia1, Lothar Esser, Maria Elberry, Fei Zhou, Linda Yu, Chang-An Yu.   

Abstract

The advantages of using bacterial systems to study the mechanism and function of cytochrome bc (1) complexes do not extend readily to their structural investigations. High quality crystals of bacterial complexes have been difficult to obtain despite the enzymes' smaller sizes and simpler subunit compositions compared to their mitochondrial counterparts. In the course of the structure determination of the bc (1) complex from R. sphaeroides, we observed that the growth of only low quality crystals correlated with low activity and stability of the purified complex, which was mitigated in part by introducing a double mutations to the enzyme. The S287R(cyt b)/V135S(ISP) mutant shows 40% increase in electron transfer activity and displays a 4.3 degrees C increase in thermal stability over wild-type enzyme. The amino acid histidine was found important in maintaining structural integrity of the bacterial complex, while the respiratory inhibitors such as stigmatellin are required for immobilization of the iron-sulfur protein extrinsic domain. Crystal quality of the R. sphaeroides bc (1) complex can be improved further by the presence of strontium ions yielding crystals that diffracted X-rays to better than 2.3 A resolution. The improved crystal quality can be understood in terms of participation of strontium ions in molecular packing arrangement in crystal.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18953640      PMCID: PMC4788495          DOI: 10.1007/s10863-008-9180-8

Source DB:  PubMed          Journal:  J Bioenerg Biomembr        ISSN: 0145-479X            Impact factor:   2.945


  25 in total

Review 1.  A novel electron transfer mechanism suggested by crystallographic studies of mitochondrial cytochrome bc1 complex.

Authors:  D Xia; H Kim; C A Yu; L Yu; A Kachurin; L Zhang; J Deisenhofer
Journal:  Biochem Cell Biol       Date:  1998       Impact factor: 3.626

Review 2.  The role of the supernumerary subunit of Rhodobacter sphaeroides cytochrome bc1 complex.

Authors:  L Yu; S C Tso; S K Shenoy; B N Quinn; D Xia
Journal:  J Bioenerg Biomembr       Date:  1999-06       Impact factor: 2.945

3.  Generation, characterization and crystallization of a highly active and stable cytochrome bc1 complex mutant from Rhodobacter sphaeroides.

Authors:  Maria Elberry; Kunhung Xiao; Lothar Esser; Di Xia; Linda Yu; Chang-An Yu
Journal:  Biochim Biophys Acta       Date:  2006-05-27

4.  Surface-modulated motion switch: capture and release of iron-sulfur protein in the cytochrome bc1 complex.

Authors:  Lothar Esser; Xing Gong; Shaoqing Yang; Linda Yu; Chang-An Yu; Di Xia
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-21       Impact factor: 11.205

5.  Flexibility of the neck region of the rieske iron-sulfur protein is functionally important in the cytochrome bc1 complex.

Authors:  H Tian; L Yu; M W Mather; C A Yu
Journal:  J Biol Chem       Date:  1998-10-23       Impact factor: 5.157

6.  Inhibitor binding changes domain mobility in the iron-sulfur protein of the mitochondrial bc1 complex from bovine heart.

Authors:  H Kim; D Xia; C A Yu; J Z Xia; A M Kachurin; L Zhang; L Yu; J Deisenhofer
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-07       Impact factor: 11.205

Review 7.  The protonmotive Q cycle. Energy transduction by coupling of proton translocation to electron transfer by the cytochrome bc1 complex.

Authors:  B L Trumpower
Journal:  J Biol Chem       Date:  1990-07-15       Impact factor: 5.157

8.  Structure at 2.3 A resolution of the cytochrome bc(1) complex from the yeast Saccharomyces cerevisiae co-crystallized with an antibody Fv fragment.

Authors:  C Hunte; J Koepke; C Lange; T Rossmanith; H Michel
Journal:  Structure       Date:  2000-06-15       Impact factor: 5.006

9.  The involvement of serine 175 and alanine 185 of cytochrome b of Rhodobacter sphaeroides cytochrome bc1 complex in interaction with iron-sulfur protein.

Authors:  H Tian; L Yu; M W Mather; C A Yu
Journal:  J Biol Chem       Date:  1997-09-19       Impact factor: 5.157

10.  Probing the role of the Fe-S subunit hinge region during Q(o) site catalysis in Rhodobacter capsulatus bc(1) complex.

Authors:  E Darrouzet; M Valkova-Valchanova; F Daldal
Journal:  Biochemistry       Date:  2000-12-19       Impact factor: 3.162

View more
  6 in total

1.  Atomic force microscopy of the bacterial photosynthetic apparatus: plain pictures of an elaborate machinery.

Authors:  Simon Scheuring; James N Sturgis
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

2.  Photo-induced oxidation of the uniquely liganded heme f in the cytochrome b6f complex of oxygenic photosynthesis.

Authors:  Adrien A P Chauvet; Rachna Agarwal; André Al Haddad; Frank van Mourik; William A Cramer
Journal:  Phys Chem Chem Phys       Date:  2016-04-25       Impact factor: 3.676

Review 3.  Structural analysis of cytochrome bc1 complexes: implications to the mechanism of function.

Authors:  Di Xia; Lothar Esser; Wai-Kwan Tang; Fei Zhou; Yihui Zhou; Linda Yu; Chang-An Yu
Journal:  Biochim Biophys Acta       Date:  2012-11-29

4.  A map of dielectric heterogeneity in a membrane protein: the hetero-oligomeric cytochrome b6f complex.

Authors:  S Saif Hasan; Stanislav D Zakharov; Adrien Chauvet; Valentyn Stadnytskyi; Sergei Savikhin; William A Cramer
Journal:  J Phys Chem B       Date:  2014-06-11       Impact factor: 2.991

Review 5.  Vitamin K2 in electron transport system: are enzymes involved in vitamin K2 biosynthesis promising drug targets?

Authors:  Michio Kurosu; Eeshwaraiah Begari
Journal:  Molecules       Date:  2010-03-10       Impact factor: 4.411

6.  Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes.

Authors:  Stefan Steimle; Trevor van Eeuwen; Yavuz Ozturk; Hee Jong Kim; Merav Braitbard; Nur Selamoglu; Benjamin A Garcia; Dina Schneidman-Duhovny; Kenji Murakami; Fevzi Daldal
Journal:  Nat Commun       Date:  2021-02-10       Impact factor: 14.919

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.