Literature DB >> 18951896

Crystal structure of Tk-subtilisin folded without propeptide: requirement of propeptide for acceleration of folding.

Shun-ichi Tanaka1, Yuki Takeuchi, Hiroyoshi Matsumura, Yuichi Koga, Kazufumi Takano, Shigenori Kanaya.   

Abstract

Tk-subtilisin (a subtilisin homologue from Thermococcus kodakaraensis) is matured from Pro-Tk-subtilisin upon autoprocessing and degradation of Tk-propeptide. To analyze the folding mechanism of Tk-subtilisin, the crystal structure of the active site mutant of Tk-subtilisin (S324A-subtilisin*), which was refolded in the presence of Ca2+ and absence of Tk-propeptide, was determined at 2.16A resolution. This structure is essentially the same as that of Tk-subtilisin matured from Pro-Tk-subtilisin. S324A-subtilisin* was refolded with a rate constant of 0.17 and 1.8min(-1) at 30 degrees C in the absence and presence of Tk-propeptide, respectively, indicating that Tk-subtilisin does not require Tk-propeptide for folding but requires it for acceleration of folding.

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Year:  2008        PMID: 18951896     DOI: 10.1016/j.febslet.2008.10.025

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  9 in total

1.  Requirement of insertion sequence IS1 for thermal adaptation of Pro-Tk-subtilisin from hyperthermophilic archaeon.

Authors:  Ryo Uehara; Shun-Ichi Tanaka; Kazufumi Takano; Yuichi Koga; Shigenori Kanaya
Journal:  Extremophiles       Date:  2012-09-21       Impact factor: 2.395

2.  Increase in activation rate of Pro-Tk-subtilisin by a single nonpolar-to-polar amino acid substitution at the hydrophobic core of the propeptide domain.

Authors:  Kota Yuzaki; Yudai Sanda; Dong-Ju You; Ryo Uehara; Yuichi Koga; Shigenori Kanaya
Journal:  Protein Sci       Date:  2013-10-19       Impact factor: 6.725

3.  Characterization of a novel subtilisin-like protease myroicolsin from deep sea bacterium Myroides profundi D25 and molecular insight into its collagenolytic mechanism.

Authors:  Li-Yuan Ran; Hai-Nan Su; Ming-Yang Zhou; Lei Wang; Xiu-Lan Chen; Bin-Bin Xie; Xiao-Yan Song; Mei Shi; Qi-Long Qin; Xiuhua Pang; Bai-Cheng Zhou; Yu-Zhong Zhang; Xi-Ying Zhang
Journal:  J Biol Chem       Date:  2014-01-15       Impact factor: 5.157

Review 4.  An overview of 25 years of research on Thermococcus kodakarensis, a genetically versatile model organism for archaeal research.

Authors:  Naeem Rashid; Mehwish Aslam
Journal:  Folia Microbiol (Praha)       Date:  2019-07-08       Impact factor: 2.099

5.  Insights into the maturation of hyperthermophilic pyrolysin and the roles of its N-terminal propeptide and long C-terminal extension.

Authors:  Zheng Dai; Heting Fu; Yufeng Zhang; Jing Zeng; Bing Tang; Xiao-Feng Tang
Journal:  Appl Environ Microbiol       Date:  2012-04-13       Impact factor: 4.792

6.  Extracellular production of the engineered thermostable protease pernisine from Aeropyrum pernix K1 in Streptomyces rimosus.

Authors:  Marko Šnajder; Andrés Felipe Carrillo Rincón; Vasilka Magdevska; Miha Bahun; Luka Kranjc; Maja Paš; Polona Juntes; Hrvoje Petković; Nataša Poklar Ulrih
Journal:  Microb Cell Fact       Date:  2019-11-07       Impact factor: 5.328

7.  Secretion of collagenases by Saccharomyces cerevisiae for collagen degradation.

Authors:  Han Xiao; Xiufang Liu; Yunzi Feng; Lin Zheng; Mouming Zhao; Mingtao Huang
Journal:  Biotechnol Biofuels Bioprod       Date:  2022-08-28

8.  Enzymatic activity of a subtilisin homolog, Tk-SP, from Thermococcus kodakarensis in detergents and its ability to degrade the abnormal prion protein.

Authors:  Azumi Hirata; Yuki Hori; Yuichi Koga; Jun Okada; Akikazu Sakudo; Kazuyoshi Ikuta; Shigenori Kanaya; Kazufumi Takano
Journal:  BMC Biotechnol       Date:  2013-02-28       Impact factor: 2.563

9.  Rotational restriction of nascent peptides as an essential element of co-translational protein folding: possible molecular players and structural consequences.

Authors:  Irina Sorokina; Arcady Mushegian
Journal:  Biol Direct       Date:  2017-05-31       Impact factor: 4.540

  9 in total

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