Literature DB >> 18951179

Electron microscope visualization of RNA transcription and processing in Saccharomyces cerevisiae by Miller chromatin spreading.

Yvonne N Osheim1, Sarah L French, Martha L Sikes, Ann L Beyer.   

Abstract

The Miller chromatin spreading technique for electron microscopic visualization of gently dispersed interphase chromatin has proven extremely valuable for analysis of genetic activities in vivo. It provides a unique view of transcription and RNA processing at the level of individual active genes. The budding yeast Saccharomyces cerevisiae has also been an invaluable model system for geneticists and molecular biologists. In this chapter, we describe methods for applying the Miller chromatin-spreading method to Saccharomyces cerevisiae. This allows one to use electron microscopic visualization of a gene of interest to study effects of specific mutations on gene activity. We are applying the method to study transcription and processing of ribosomal RNA.

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Year:  2009        PMID: 18951179     DOI: 10.1007/978-1-60327-461-6_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  18 in total

1.  Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.

Authors:  Aziz El Hage; Sarah L French; Ann L Beyer; David Tollervey
Journal:  Genes Dev       Date:  2010-07-15       Impact factor: 11.361

2.  Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes.

Authors:  Sarah L French; Martha L Sikes; Robert D Hontz; Yvonne N Osheim; Tashima E Lambert; Aziz El Hage; Mitchell M Smith; David Tollervey; Jeffrey S Smith; Ann L Beyer
Journal:  Mol Cell Biol       Date:  2010-11-22       Impact factor: 4.272

3.  Yeast pre-rRNA processing and modification occur cotranscriptionally.

Authors:  Martin Kos; David Tollervey
Journal:  Mol Cell       Date:  2010-03-26       Impact factor: 17.970

4.  The Reb1-homologue Ydr026c/Nsi1 is required for efficient RNA polymerase I termination in yeast.

Authors:  Alarich Reiter; Stephan Hamperl; Hannah Seitz; Philipp Merkl; Jorge Perez-Fernandez; Lydia Williams; Jochen Gerber; Attila Németh; Isabelle Léger; Olivier Gadal; Philipp Milkereit; Joachim Griesenbeck; Herbert Tschochner
Journal:  EMBO J       Date:  2012-07-17       Impact factor: 11.598

5.  Distribution of Initiation Times Reveals Mechanisms of Transcriptional Regulation in Single Cells.

Authors:  Sandeep Choubey; Jane Kondev; Alvaro Sanchez
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

6.  Structure of RNA polymerase I transcribing ribosomal DNA genes.

Authors:  Simon Neyer; Michael Kunz; Christian Geiss; Merle Hantsche; Victor-Valentin Hodirnau; Anja Seybert; Christoph Engel; Margot P Scheffer; Patrick Cramer; Achilleas S Frangakis
Journal:  Nature       Date:  2016-11-14       Impact factor: 49.962

7.  RNA polymerase I-specific subunits promote polymerase clustering to enhance the rRNA gene transcription cycle.

Authors:  Benjamin Albert; Isabelle Léger-Silvestre; Christophe Normand; Martin K Ostermaier; Jorge Pérez-Fernández; Kostya I Panov; Joost C B M Zomerdijk; Patrick Schultz; Olivier Gadal
Journal:  J Cell Biol       Date:  2011-01-24       Impact factor: 10.539

8.  RNA polymerase I (Pol I) passage through nucleosomes depends on Pol I subunits binding its lobe structure.

Authors:  Philipp E Merkl; Michael Pilsl; Tobias Fremter; Katrin Schwank; Christoph Engel; Gernot Längst; Philipp Milkereit; Joachim Griesenbeck; Herbert Tschochner
Journal:  J Biol Chem       Date:  2020-02-14       Impact factor: 5.157

9.  TOR-dependent reduction in the expression level of Rrn3p lowers the activity of the yeast RNA Pol I machinery, but does not account for the strong inhibition of rRNA production.

Authors:  Anja Philippi; Robert Steinbauer; Alarich Reiter; Stephan Fath; Isabelle Leger-Silvestre; Philipp Milkereit; Joachim Griesenbeck; Herbert Tschochner
Journal:  Nucleic Acids Res       Date:  2010-04-25       Impact factor: 16.971

10.  Rpd3- and spt16-mediated nucleosome assembly and transcriptional regulation on yeast ribosomal DNA genes.

Authors:  Joseph M Johnson; Sarah L French; Yvonne N Osheim; Mingguang Li; Lindsey Hall; Ann L Beyer; Jeffrey S Smith
Journal:  Mol Cell Biol       Date:  2013-05-20       Impact factor: 4.272

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