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Literature DB >> 1894000

Two types of linkage between codon usage and gene-expression levels.

Abstract

The relation between codon usage and gene-expression levels is an intensively investigated and discussed topic in the field of molecular evolution. We statistically analyzed 25 Escherichia coli gene sequences by a new classification of synonymous codons and found that (i) there are two distinct types of linkage between codon usage and gene-expression levels in E. coli, and (ii) one of the two kinds of codon preferences (the codon preference concerned with interaction of GC/AT choice at three codon positions) is observed significantly in weakly expressed genes.

Entities: Species

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Substances：
Codon

Year: 1991 PMID： 1894000 DOI： 10.1016/0014-5793(91)80923-q

Source DB: PubMed Journal: FEBS Lett ISSN： 0014-5793 Impact factor: 4.124

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Cited

8 in total

1. Rational design and PCR-based synthesis of an artificial Schizophyllum commune xylanase gene.

Authors: R W Graham; T Atkinson; D G Kilburn; R C Miller; R A Warren
Journal: Nucleic Acids Res Date: 1993-10-25 Impact factor: 16.971

2. On the relationship between preferred termination codon contexts and nonsense suppression in human cells.

Authors: R Martin
Journal: Nucleic Acids Res Date: 1994-01-11 Impact factor: 16.971

3. Analysis of the codon use frequency of AMPK family genes from different species.

Authors: Qin Zhang; Sheng Zhao; Hong Chen; Xiaolin Liu; Li Zhang; Fei Li
Journal: Mol Biol Rep Date: 2008-01-11 Impact factor: 2.316

4. Mapping codon usage of the translation initiation region in porcine reproductive and respiratory syndrome virus genome.

Authors: Jun-hong Su; Xiao-xia Ma; Ya-li He; Ji-dong Li; Xu-sheng Ma; Yong-xi Dou; Xue-nong Luo; Xue-peng Cai
Journal: Virol J Date: 2011-10-21 Impact factor: 4.099

Two types of linkage between codon usage and gene-expression levels.

1. Rational design and PCR-based synthesis of an artificial Schizophyllum commune xylanase gene.

2. On the relationship between preferred termination codon contexts and nonsense suppression in human cells.

3. Analysis of the codon use frequency of AMPK family genes from different species.

4. Mapping codon usage of the translation initiation region in porcine reproductive and respiratory syndrome virus genome.

5. System analysis of synonymous codon usage biases in archaeal virus genomes.

6. Molecular architecture of silk fibroin of Indian golden silkmoth, Antheraea assama.

7. Biological meaning of "habitable zone" in nucleotide composition space.

8. Analysis of synonymous codon usage in 11 human bocavirus isolates.