Literature DB >> 18937506

Structure-based design of a highly active vitamin D hydroxylase from Streptomyces griseolus CYP105A1.

Keiko Hayashi1, Hiroshi Sugimoto, Raku Shinkyo, Masato Yamada, Shinnosuke Ikeda, Shinichi Ikushiro, Masaki Kamakura, Yoshitsugu Shiro, Toshiyuki Sakaki.   

Abstract

CYP105A1 from Streptomyces griseolus has the capability of converting vitamin D 3 (VD 3) to its active form, 1alpha,25-dihydroxyvitamin D 3 (1alpha,25(OH) 2D 3) by a two-step hydroxylation reaction. Our previous structural study has suggested that Arg73 and Arg84 are key residues for the activities of CYP105A1. In this study, we prepared a series of single and double mutants by site-directed mutagenesis focusing on these two residues of CYP105A1 to obtain the hyperactive vitamin D 3 hydroxylase. R84F mutation altered the substrate specificity that gives preference to the 1alpha-hydroxylation of 25-hydroxyvitamin D 3 over the 25-hydroxylation of 1alpha-hydroxyvitamin D 3, opposite to the wild type and other mutants. The double mutant R73V/R84A exhibited 435- and 110-fold higher k cat/ K m values for the 25-hydroxylation of 1alpha-hydroxyvitamin D 3 and 1alpha-hydroxylation of 25-hydroxyvitamin D 3, respectively, compared with the wild-type enzyme. These values notably exceed those of CYP27A1, which is the physiologically essential VD 3 hydroxylase. Thus, we successfully generated useful enzymes of altered substrate preference and hyperactivity. Structural and kinetic analyses of single and double mutants suggest that the amino acid residues at positions 73 and 84 affect the location and conformation of the bound compound in the reaction site and those in the transient binding site, respectively.

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Year:  2008        PMID: 18937506     DOI: 10.1021/bi801222d

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  13 in total

Review 1.  Conformational plasticity and structure/function relationships in cytochromes P450.

Authors:  Thomas C Pochapsky; Sophia Kazanis; Marina Dang
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

2.  Crystallization and preliminary X-ray diffraction studies of vitamin D3 hydroxylase, a novel cytochrome P450 isolated from Pseudonocardia autotrophica.

Authors:  Yoshiaki Yasutake; Yoshikazu Fujii; Woo Kwang Cheon; Akira Arisawa; Tomohiro Tamura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-25

Review 3.  Cytochromes P450 for natural product biosynthesis in Streptomyces: sequence, structure, and function.

Authors:  Jeffrey D Rudolf; Chin-Yuan Chang; Ming Ma; Ben Shen
Journal:  Nat Prod Rep       Date:  2017-08-30       Impact factor: 13.423

Review 4.  Engineering cytochrome P450 enzyme systems for biomedical and biotechnological applications.

Authors:  Zhong Li; Yuanyuan Jiang; F Peter Guengerich; Li Ma; Shengying Li; Wei Zhang
Journal:  J Biol Chem       Date:  2019-12-06       Impact factor: 5.157

Review 5.  Diversity of P450 enzymes in the biosynthesis of natural products.

Authors:  Larissa M Podust; David H Sherman
Journal:  Nat Prod Rep       Date:  2012-07-23       Impact factor: 13.423

6.  Structural evidence for enhancement of sequential vitamin D3 hydroxylation activities by directed evolution of cytochrome P450 vitamin D3 hydroxylase.

Authors:  Yoshiaki Yasutake; Yoshikazu Fujii; Taiki Nishioka; Woo-Kwang Cheon; Akira Arisawa; Tomohiro Tamura
Journal:  J Biol Chem       Date:  2010-07-27       Impact factor: 5.157

7.  Hydroxylation of Steroids by a Microbial Substrate-Promiscuous P450 Cytochrome (CYP105D7): Key Arginine Residues for Rational Design.

Authors:  Bingbing Ma; Qianwen Wang; Haruo Ikeda; Chunfang Zhang; Lian-Hua Xu
Journal:  Appl Environ Microbiol       Date:  2019-11-14       Impact factor: 4.792

Review 8.  CYP105-diverse structures, functions and roles in an intriguing family of enzymes in Streptomyces.

Authors:  Suzy C Moody; E Joel Loveridge
Journal:  J Appl Microbiol       Date:  2014-11-04       Impact factor: 3.772

9.  Crystal Structure of Cytochrome P450 (CYP105P2) from Streptomyces peucetius and Its Conformational Changes in Response to Substrate Binding.

Authors:  Chang Woo Lee; Joo-Ho Lee; Hemraj Rimal; Hyun Park; Jun Hyuck Lee; Tae-Jin Oh
Journal:  Int J Mol Sci       Date:  2016-05-25       Impact factor: 5.923

10.  Characterization of high-H2O2-tolerant bacterial cytochrome P450 CYP105D18: insights into papaverine N-oxidation.

Authors:  Bashu Dev Pardhe; Hackwon Do; Chang-Sook Jeong; Ki-Hwa Kim; Jun Hyuck Lee; Tae-Jin Oh
Journal:  IUCrJ       Date:  2021-06-29       Impact factor: 4.769

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