Literature DB >> 18931444

Initial crystallographic study of human PCNA in complex with a peptide containing the noncanonical PIP-box sequence of human DNA polymerase iota.

Asami Hishiki1, Toshiyuki Shimizu, Tomo Hanafusa, Haruo Ohmori, Mamoru Sato, Hiroshi Hashimoto.   

Abstract

Human DNA polymerase iota (Poliota) is one of the Y-family DNA polymerases involved in translesion synthesis (TLS), which allows continued replication at damaged DNA templates. Poliota has a noncanonical PCNA-interacting protein box (PIP-box) within an internal region of the protein. Poliota activity is stimulated by PCNA binding through the noncanonical PIP-box. To clarify the interaction of PCNA with the noncanonical PIP-box of Poliota, PCNA and a Poliota peptide carrying the noncanonical PIP-box complex have been cocrystallized. The crystal belongs to space group C2, with unit-cell parameters a = 167.1, b = 68.7, c = 90.0 A, beta = 95.1 degrees . Structural analysis by molecular replacement is in progress.

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Year:  2008        PMID: 18931444      PMCID: PMC2564886          DOI: 10.1107/S1744309108028522

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  The Y-family of DNA polymerases.

Authors:  H Ohmori; E C Friedberg; R P Fuchs; M F Goodman; F Hanaoka; D Hinkle; T A Kunkel; C W Lawrence; Z Livneh; T Nohmi; L Prakash; S Prakash; T Todo; G C Walker; Z Wang; R Woodgate
Journal:  Mol Cell       Date:  2001-07       Impact factor: 17.970

2.  Targeting of human DNA polymerase iota to the replication machinery via interaction with PCNA.

Authors:  L Haracska; R E Johnson; I Unk; B B Phillips; J Hurwitz; L Prakash; S Prakash
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-27       Impact factor: 11.205

3.  Error-free and error-prone lesion bypass by human DNA polymerase kappa in vitro.

Authors:  Y Zhang; F Yuan; X Wu; M Wang; O Rechkoblit; J S Taylor; N E Geacintov; Z Wang
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

4.  Stimulation of DNA synthesis activity of human DNA polymerase kappa by PCNA.

Authors:  Lajos Haracska; Ildiko Unk; Robert E Johnson; Barbara B Phillips; Jerard Hurwitz; Louise Prakash; Satya Prakash
Journal:  Mol Cell Biol       Date:  2002-02       Impact factor: 4.272

5.  Translesion synthesis by human DNA polymerase kappa on a DNA template containing a single stereoisomer of dG-(+)- or dG-(-)-anti-N(2)-BPDE (7,8-dihydroxy-anti-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a]pyrene).

Authors:  Naomi Suzuki; Eiji Ohashi; Alexander Kolbanovskiy; Nicholas E Geacintov; Arthur P Grollman; Haruo Ohmori; Shinya Shibutani
Journal:  Biochemistry       Date:  2002-05-14       Impact factor: 3.162

6.  Mechanisms of accurate translesion synthesis by human DNA polymerase eta.

Authors:  C Masutani; R Kusumoto; S Iwai; F Hanaoka
Journal:  EMBO J       Date:  2000-06-15       Impact factor: 11.598

7.  Misinsertion and bypass of thymine-thymine dimers by human DNA polymerase iota.

Authors:  A Tissier; E G Frank; J P McDonald; S Iwai; F Hanaoka; R Woodgate
Journal:  EMBO J       Date:  2000-10-02       Impact factor: 11.598

8.  Physical and functional interactions of human DNA polymerase eta with PCNA.

Authors:  L Haracska; R E Johnson; I Unk; B Phillips; J Hurwitz; L Prakash; S Prakash
Journal:  Mol Cell Biol       Date:  2001-11       Impact factor: 4.272

9.  Structure-function relationship of the eukaryotic DNA replication factor, proliferating cell nuclear antigen.

Authors:  K Fukuda; H Morioka; S Imajou; S Ikeda; E Ohtsuka; T Tsurimoto
Journal:  J Biol Chem       Date:  1995-09-22       Impact factor: 5.157

10.  Activities of human DNA polymerase kappa in response to the major benzo[a]pyrene DNA adduct: error-free lesion bypass and extension synthesis from opposite the lesion.

Authors:  Yanbin Zhang; Xiaohua Wu; Dongyu Guo; Olga Rechkoblit; Zhigang Wang
Journal:  DNA Repair (Amst)       Date:  2002-07-17
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  4 in total

Review 1.  Mutagenic repair of DNA interstrand crosslinks.

Authors:  Xi Shen; Lei Li
Journal:  Environ Mol Mutagen       Date:  2010-07       Impact factor: 3.216

2.  Structural basis for novel interactions between human translesion synthesis polymerases and proliferating cell nuclear antigen.

Authors:  Asami Hishiki; Hiroshi Hashimoto; Tomo Hanafusa; Keijiro Kamei; Eiji Ohashi; Toshiyuki Shimizu; Haruo Ohmori; Mamoru Sato
Journal:  J Biol Chem       Date:  2009-02-10       Impact factor: 5.157

3.  Structure of proliferating cell nuclear antigen (PCNA) bound to an APIM peptide reveals the universality of PCNA interaction.

Authors:  Kodai Hara; Masayuki Uchida; Risa Tagata; Hideshi Yokoyama; Yoshinobu Ishikawa; Asami Hishiki; Hiroshi Hashimoto
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-03-22       Impact factor: 1.056

4.  Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease.

Authors:  Alejandro Álvarez-Quilón; Jessica L Wojtaszek; Marie-Claude Mathieu; Tejas Patel; C Denise Appel; Nicole Hustedt; Silvia Emma Rossi; Bret D Wallace; Dheva Setiaputra; Salomé Adam; Yota Ohashi; Henrique Melo; Tiffany Cho; Christian Gervais; Ivan M Muñoz; Eric Grazzini; Jordan T F Young; John Rouse; Michael Zinda; R Scott Williams; Daniel Durocher
Journal:  Mol Cell       Date:  2020-06-08       Impact factor: 17.970

  4 in total

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