Literature DB >> 18931443

Three crystal forms of the bifunctional enzyme proline utilization A (PutA) from Bradyrhizobium japonicum.

Jonathan P Schuermann1, Tommi A White, Dhiraj Srivastava, Dale B Karr, John J Tanner.   

Abstract

Proline utilization A proteins (PutAs) are large (1000-1300 residues) membrane-associated bifunctional flavoenzymes that catalyze the two-step oxidation of proline to glutamate by the sequential action of proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase domains. Here, the first successful crystallization efforts for a PutA protein are described. Three crystal forms of PutA from Bradyrhizobium japonicum are reported: apparent tetragonal, hexagonal and centered monoclinic. The apparent tetragonal and hexagonal crystals were grown in the presence of PEG 3350 and sodium formate near pH 7. The apparent tetragonal form diffracted to 2.7 A resolution and exhibited pseudo-merohedral twinning such that the true space group is P2(1)2(1)2(1) with four molecules in the asymmetric unit. The hexagonal form diffracted to 2.3 A resolution and belonged to space group P6(2)22 with one molecule in the asymmetric unit. Centered monoclinic crystals were grown in ammonium sulfate, diffracted to 2.3 A resolution and had two molecules in the asymmetric unit. Removing the histidine tag was important in order to obtain the C2 crystal form.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18931443      PMCID: PMC2564878          DOI: 10.1107/S174430910802842X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  36 in total

Review 1.  The molecular basis of substrate channeling.

Authors:  E W Miles; S Rhee; D R Davies
Journal:  J Biol Chem       Date:  1999-04-30       Impact factor: 5.157

2.  Electrochemical and functional characterization of the proline dehydrogenase domain of the PutA flavoprotein from Escherichia coli.

Authors:  Madhavan P Vinod; Padmanetra Bellur; Donald F Becker
Journal:  Biochemistry       Date:  2002-05-21       Impact factor: 3.162

3.  A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning.

Authors:  Jennifer E Padilla; Todd O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-06-27

4.  Structure determination of plastocyanin from a specimen with a hemihedral twinning fraction of one-half.

Authors:  M R Redinbo; T O Yeates
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-07-01

5.  Redox-induced changes in flavin structure and roles of flavin N(5) and the ribityl 2'-OH group in regulating PutA--membrane binding.

Authors:  Weimin Zhang; Min Zhang; Weidong Zhu; Yuzhen Zhou; Srimevan Wanduragala; Dustin Rewinkel; John J Tanner; Donald F Becker
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Regulation of the genes for proline utilization in Salmonella typhimurium: autogenous repression by the putA gene product.

Authors:  R Menzel; J Roth
Journal:  J Mol Biol       Date:  1981-05-05       Impact factor: 5.469

8.  Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors.

Authors:  Min Zhang; Tommi A White; Jonathan P Schuermann; Berevan A Baban; Donald F Becker; John J Tanner
Journal:  Biochemistry       Date:  2004-10-05       Impact factor: 3.162

9.  The PutA protein of Salmonella typhimurium catalyzes the two steps of proline degradation via a leaky channel.

Authors:  M W Surber; S Maloy
Journal:  Arch Biochem Biophys       Date:  1998-06-15       Impact factor: 4.013

Review 10.  Scaling and assessment of data quality.

Authors:  Philip Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-12-14
View more
  7 in total

1.  Biophysical investigation of type A PutAs reveals a conserved core oligomeric structure.

Authors:  David A Korasick; Harkewal Singh; Travis A Pemberton; Min Luo; Richa Dhatwalia; John J Tanner
Journal:  FEBS J       Date:  2017-08-01       Impact factor: 5.542

2.  Crystal structure of the bifunctional proline utilization A flavoenzyme from Bradyrhizobium japonicum.

Authors:  Dhiraj Srivastava; Jonathan P Schuermann; Tommi A White; Navasona Krishnan; Nikhilesh Sanyal; Greg L Hura; Anmin Tan; Michael T Henzl; Donald F Becker; John J Tanner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

3.  Redox Modulation of Oligomeric State in Proline Utilization A.

Authors:  David A Korasick; Ashley C Campbell; Shelbi L Christgen; Srinivas Chakravarthy; Tommi A White; Donald F Becker; John J Tanner
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

Review 4.  Unique structural features and sequence motifs of proline utilization A (PutA).

Authors:  Ranjan K Singh; John J Tanner
Journal:  Front Biosci (Landmark Ed)       Date:  2012-01-01

5.  Kinetic and structural characterization of tunnel-perturbing mutants in Bradyrhizobium japonicum proline utilization A.

Authors:  Benjamin W Arentson; Min Luo; Travis A Pemberton; John J Tanner; Donald F Becker
Journal:  Biochemistry       Date:  2014-07-30       Impact factor: 3.162

6.  Evidence that the C-terminal domain of a type B PutA protein contributes to aldehyde dehydrogenase activity and substrate channeling.

Authors:  Min Luo; Shelbi Christgen; Nikhilesh Sanyal; Benjamin W Arentson; Donald F Becker; John J Tanner
Journal:  Biochemistry       Date:  2014-08-26       Impact factor: 3.162

7.  Structural Basis for the Substrate Inhibition of Proline Utilization A by Proline.

Authors:  David A Korasick; Travis A Pemberton; Benjamin W Arentson; Donald F Becker; John J Tanner
Journal:  Molecules       Date:  2017-12-23       Impact factor: 4.411

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.