Literature DB >> 18931432

Crystallization and preliminary crystallographic studies of putative threonyl-tRNA synthetases from Aeropyrum pernix and Sulfolobus tokodaii.

Satoru Shimizu1, Ella Czarina Magat Juan, Yu Ichiro Miyashita, Yoshiteru Sato, Md Mominul Hoque, Kaoru Suzuki, Masataka Yogiashi, Masaru Tsunoda, Anne Catherine Dock-Bregeon, Dino Moras, Takeshi Sekiguchi, Akio Takénaka.   

Abstract

Threonyl-tRNA synthetase (ThrRS) plays an essential role in protein synthesis by catalyzing the aminoacylation of tRNA(Thr) and editing misacylation. ThrRS generally contains an N-terminal editing domain, a catalytic domain and an anticodon-binding domain. The sequences of the editing domain in ThrRSs from archaea differ from those in bacteria and eukaryotes. Furthermore, several creanarchaea including Aeropyrum pernix K1 and Sulfolobus tokodaii strain 7 contain two genes encoding either the catalytic or the editing domain of ThrRS. To reveal the structural basis for this evolutionary divergence, the two types of ThrRS from the crenarchaea A. pernix and S. tokodaii have been overexpressed in Eschericha coli, purified and crystallized by the hanging-drop vapour-diffusion method. Diffraction data were collected and the structure of a selenomethionine-labelled A. pernix type-1 ThrRS crystal has been solved using the MAD method.

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Year:  2008        PMID: 18931432      PMCID: PMC2564875          DOI: 10.1107/S1744309108026924

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  26 in total

1.  Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase.

Authors:  R Sankaranarayanan; A C Dock-Bregeon; B Rees; M Bovee; J Caillet; P Romby; C S Francklyn; D Moras
Journal:  Nat Struct Biol       Date:  2000-06

2.  Structural basis of translational control by Escherichia coli threonyl tRNA synthetase.

Authors:  Alfredo Torres-Larios; Anne-Catherine Dock-Bregeon; Pascale Romby; Bernard Rees; Rajan Sankaranarayanan; Joel Caillet; Mathias Springer; Chantal Ehresmann; Bernard Ehresmann; Dino Moras
Journal:  Nat Struct Biol       Date:  2002-05

3.  Conformational movements and cooperativity upon amino acid, ATP and tRNA binding in threonyl-tRNA synthetase.

Authors:  Alfredo Torres-Larios; Rajan Sankaranarayanan; Bernard Rees; Anne Catherine Dock-Bregeon; Dino Moras
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

4.  Methods used in the structure determination of bovine mitochondrial F1 ATPase.

Authors:  J P Abrahams; A G Leslie
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-01-01

5.  A second class of synthetase structure revealed by X-ray analysis of Escherichia coli seryl-tRNA synthetase at 2.5 A.

Authors:  S Cusack; C Berthet-Colominas; M Härtlein; N Nassar; R Leberman
Journal:  Nature       Date:  1990-09-20       Impact factor: 49.962

6.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

7.  Hydrolytic action of aminoacyl-tRNA synthetases from baker's yeast. "Chemical proofreading" of Thr-tRNA Val by valyl-tRNA synthetase studied with modified tRNA Val and amino acid analogues.

Authors:  G L Igloi; F von der Haar; F Cramer
Journal:  Biochemistry       Date:  1977-04-19       Impact factor: 3.162

8.  A freestanding proofreading domain is required for protein synthesis quality control in Archaea.

Authors:  Dragana Korencic; Ivan Ahel; James Schelert; Meik Sacher; Benfang Ruan; Constantinos Stathopoulos; Paul Blum; Michael Ibba; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-06       Impact factor: 11.205

9.  Structure of the nondiscriminating aspartyl-tRNA synthetase from the crenarchaeon Sulfolobus tokodaii strain 7 reveals the recognition mechanism for two different tRNA anticodons.

Authors:  Yoshiteru Sato; Yohei Maeda; Satoru Shimizu; Md Tofazzal Hossain; Souichirou Ubukata; Kaoru Suzuki; Takeshi Sekiguchi; Akio Takénaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-09-19

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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