Literature DB >> 18931371

The protonation state of the cross-linked tyrosine during the catalytic cycle of cytochrome c oxidase.

Elena A Gorbikova1, Mårten Wikström, Michael I Verkhovsky.   

Abstract

Cytochrome c oxidase is the terminal complex of the respiratory chain in mitochondria and some aerobic bacteria and is responsible for most of the O(2) consumption in biology. The key reaction in the catalysis of O(2) reduction is O-O bond scission that requires four electrons and a proton. In our recent work (Gorbikova, E. A., Belevich, I., Wikstrom, M., and Verkhovsky, M. I. (2008) Proc. Natl. Acad. Sci. U. S. A. 105, 10733-10737), it was shown that the cross-linked Tyr-280 (Paracoccus denitrificans numbering) provides the proton for O-O bond cleavage. The deprotonated Tyr-280 must be reprotonated later on in the catalytic cycle to serve as a proton donor for the next oxygen reduction event. To find the reaction step at which the cross-linked Tyr-280 becomes reprotonated, all further steps of the catalytic cycle after O-O bond cleavage were followed by infrared spectroscopy. We found that complete reprotonation of the tyrosine is linked to the formation of the one-electron reduced state coupled to reduction of the Cu(B) site.

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Year:  2008        PMID: 18931371      PMCID: PMC3259884          DOI: 10.1074/jbc.M803511200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

1.  Tracing the D-pathway in reconstituted site-directed mutants of cytochrome c oxidase from Paracoccus denitrificans.

Authors:  U Pfitzner; K Hoffmeier; A Harrenga; A Kannt; H Michel; E Bamberg; O M Richter; B Ludwig
Journal:  Biochemistry       Date:  2000-06-13       Impact factor: 3.162

2.  Attenuated total reflection Fourier transform infrared studies of redox changes in bovine cytochrome c oxidase: resolution of the redox Fourier transform infrared difference spectrum of heme a(3).

Authors:  Peter R Rich; Jacques Breton
Journal:  Biochemistry       Date:  2002-01-22       Impact factor: 3.162

3.  Some properties of the redox components of cytochrome c oxidase and their interactions.

Authors:  D F Wilson; M Erecińska; C S Owen
Journal:  Arch Biochem Biophys       Date:  1976-07       Impact factor: 4.013

4.  Proton pump coupled to cytochrome c oxidase in mitochondria.

Authors:  M K Wikstrom
Journal:  Nature       Date:  1977-03-17       Impact factor: 49.962

5.  Functional intermediates in reaction of cytochrome oxidase with oxygen.

Authors:  B Chance; C Saronio; J S Leigh
Journal:  Proc Natl Acad Sci U S A       Date:  1975-04       Impact factor: 11.205

6.  Redox dependent changes at the heme propionates in cytochrome c oxidase from Paracoccus denitrificans: direct evidence from FTIR difference spectroscopy in combination with heme propionate 13C labeling.

Authors:  J Behr; P Hellwig; W Mäntele; H Michel
Journal:  Biochemistry       Date:  1998-05-19       Impact factor: 3.162

7.  Observation of the Fe4+ = O stretching Raman band for cytochrome oxidase compound B at ambient temperature.

Authors:  T Ogura; S Takahashi; K Shinzawa-Itoh; S Yoshikawa; T Kitagawa
Journal:  J Biol Chem       Date:  1990-09-05       Impact factor: 5.157

8.  The effect of pH and temperature on the reaction of fully reduced and mixed-valence cytochrome c oxidase with dioxygen.

Authors:  M Oliveberg; P Brzezinski; B G Malmström
Journal:  Biochim Biophys Acta       Date:  1989-12-07

Review 9.  Structures of reaction intermediates of bovine cytochrome c oxidase probed by time-resolved vibrational spectroscopy.

Authors:  T Kitagawa
Journal:  J Inorg Biochem       Date:  2000-11       Impact factor: 4.155

10.  Role of the PR intermediate in the reaction of cytochrome c oxidase with O2.

Authors:  J E Morgan; M I Verkhovsky; G Palmer; M Wikström
Journal:  Biochemistry       Date:  2001-06-12       Impact factor: 3.162

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  17 in total

1.  Snapshot of an oxygen intermediate in the catalytic reaction of cytochrome c oxidase.

Authors:  Izumi Ishigami; Ariel Lewis-Ballester; Austin Echelmeier; Gerrit Brehm; Nadia A Zatsepin; Thomas D Grant; Jesse D Coe; Stella Lisova; Garrett Nelson; Shangji Zhang; Zachary F Dobson; Sébastien Boutet; Raymond G Sierra; Alexander Batyuk; Petra Fromme; Raimund Fromme; John C H Spence; Alexandra Ros; Syun-Ru Yeh; Denis L Rousseau
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-11       Impact factor: 11.205

2.  Modeling the detailed kinetics of mitochondrial cytochrome c oxidase: Catalytic mechanism and nitric oxide inhibition.

Authors:  Venkat R Pannala; Amadou K S Camara; Ranjan K Dash
Journal:  J Appl Physiol (1985)       Date:  2016-09-15

3.  Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase.

Authors:  Vivek Sharma; Giray Enkavi; Ilpo Vattulainen; Tomasz Róg; Mårten Wikström
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

4.  Kinetic gating of the proton pump in cytochrome c oxidase.

Authors:  Young C Kim; Mårten Wikström; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-03       Impact factor: 11.205

5.  A Water Dimer Shift Activates a Proton Pumping Pathway in the PR → F Transition of ba3 Cytochrome c Oxidase.

Authors:  Wen-Ge Han Du; Andreas W Götz; Louis Noodleman
Journal:  Inorg Chem       Date:  2018-01-08       Impact factor: 5.165

6.  Phenol-Induced O-O Bond Cleavage in a Low-Spin Heme-Peroxo-Copper Complex: Implications for O2 Reduction in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Matthew T Kieber-Emmons; Suzanne M Adam; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-06-06       Impact factor: 15.419

Review 7.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

Review 8.  Proton-pumping mechanism of cytochrome c oxidase: a kinetic master-equation approach.

Authors:  Young C Kim; Gerhard Hummer
Journal:  Biochim Biophys Acta       Date:  2011-09-16

9.  Geometric and Electronic Structure Contributions to O-O Cleavage and the Resultant Intermediate Generated in Heme-Copper Oxidases.

Authors:  Andrew W Schaefer; Antonio C Roveda; Anex Jose; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-06-17       Impact factor: 15.419

10.  Partial steps of charge translocation in the nonpumping N139L mutant of Rhodobacter sphaeroides cytochrome c oxidase with a blocked D-channel.

Authors:  Sergey A Siletsky; Jiapeng Zhu; Robert B Gennis; Alexander A Konstantinov
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

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