Literature DB >> 18849648

Data pushing: a fly-centric guide to bioinformatics tools.

James Costello1, Amy C Cash, Mehmet M Dalkilic, Justen Andrews.   

Abstract

Bioinformatics tools can be invaluable resources to Drosophila researchers; however, the sheer number of applications and databases can be overwhelming. We present a broad overview of common bioinformatics tasks and the resources used to do them, with a specific focus on resources for Drosophila. The topics covered include: Genome Databases, Sequence Analysis, Comparative Genomics, Gene Expression Databases and Analysis Tools, Function-Based Data and Analysis, Pathways, Networks, and Interactions; and finally, tools to stay current with resources and literature. We also present a compilation of URLs and short descriptions that correspond to the topics and resources mentioned in this review.

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Year:  2008        PMID: 18849648     DOI: 10.4161/fly.5864

Source DB:  PubMed          Journal:  Fly (Austin)        ISSN: 1933-6934            Impact factor:   2.160


  3 in total

1.  A database for the analysis of immunity genes in Drosophila: PADMA database.

Authors:  Mark J Lee; Ariful Mondal; Chiyedza Small; Indira Paddibhatla; Akira Kawaguchi; Shubha Govind
Journal:  Fly (Austin)       Date:  2011-04-01       Impact factor: 2.160

2.  Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function.

Authors:  James C Costello; Mehmet M Dalkilic; Scott M Beason; Jeff R Gehlhausen; Rupali Patwardhan; Sumit Middha; Brian D Eads; Justen R Andrews
Journal:  Genome Biol       Date:  2009-09-16       Impact factor: 13.583

Review 3.  The gap gene network.

Authors:  Johannes Jaeger
Journal:  Cell Mol Life Sci       Date:  2010-10-08       Impact factor: 9.261

  3 in total

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