Literature DB >> 18839332

Analysis of xenon binding to photosystem II by X-ray crystallography.

J W Murray1, K Maghlaoui, J Kargul, M Sugiura, J Barber.   

Abstract

In order to investigate oxygen binding and hydrophobic cavities in photosystem II (PSII), we have introduced xenon under pressure into crystals of PSII isolated from Thermosynechococcus elongatus and used X-ray anomalous diffraction analyses to identify the xenon sites in the complex. Under the conditions employed, 25 Xe-binding sites were identified in each monomer of the dimeric PSII complex. The majority of these were distributed within the membrane spanning portion of the complex with no obvious correlation with the previously proposed oxygen channels. One binding site was located close to the haem of cytochrome b559 in a position analogous to a Xe-binding site of myoglobin. The only Xe-binding site not associated with the intrinsic subunits of PSII was within the hydrophobic core of the PsbO protein.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18839332     DOI: 10.1007/s11120-008-9366-2

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  21 in total

1.  The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides.

Authors:  Margareta Svensson-Ek; Jeff Abramson; Gisela Larsson; Susanna Törnroth; Peter Brzezinski; So Iwata
Journal:  J Mol Biol       Date:  2002-08-09       Impact factor: 5.469

2.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

3.  Towards complete cofactor arrangement in the 3.0 A resolution structure of photosystem II.

Authors:  Bernhard Loll; Jan Kern; Wolfram Saenger; Athina Zouni; Jacek Biesiadka
Journal:  Nature       Date:  2005-12-15       Impact factor: 49.962

4.  Access channels and methanol binding site to the CaMn4 cluster in Photosystem II based on solvent accessibility simulations, with implications for substrate water access.

Authors:  Felix M Ho; Stenbjörn Styring
Journal:  Biochim Biophys Acta       Date:  2007-09-14

5.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

6.  Channelling of dioxygen into the respiratory enzyme.

Authors:  S Riistama; A Puustinen; A García-Horsman; S Iwata; H Michel; M Wikström
Journal:  Biochim Biophys Acta       Date:  1996-07-18

7.  Does functional photosystem II complex have an oxygen channel?

Authors:  J M Anderson
Journal:  FEBS Lett       Date:  2001-01-12       Impact factor: 4.124

8.  Binding of xenon to sperm whale myoglobin.

Authors:  B P Schoenborn; H C Watson; J C Kendrew
Journal:  Nature       Date:  1965-07-03       Impact factor: 49.962

9.  Photosynthetic water oxidation at elevated dioxygen partial pressure monitored by time-resolved X-ray absorption measurements.

Authors:  Michael Haumann; Alexander Grundmeier; Ivelina Zaharieva; Holger Dau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-05       Impact factor: 11.205

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  6 in total

1.  Identification of oxidized amino acid residues in the vicinity of the Mn(4)CaO(5) cluster of Photosystem II: implications for the identification of oxygen channels within the Photosystem.

Authors:  Laurie K Frankel; Larry Sallans; Patrick A Limbach; Terry M Bricker
Journal:  Biochemistry       Date:  2012-08-02       Impact factor: 3.162

2.  Structural analysis of a Vibrio phospholipase reveals an unusual Ser-His-chloride catalytic triad.

Authors:  Ye Wan; Changshui Liu; Qingjun Ma
Journal:  J Biol Chem       Date:  2019-05-09       Impact factor: 5.157

3.  A reaction center-dependent photoprotection mechanism in a highly robust photosystem II from an extremophilic red alga, Cyanidioschyzon merolae.

Authors:  Tomasz Krupnik; Eva Kotabová; Laura S van Bezouwen; Radoslaw Mazur; Maciej Garstka; Peter J Nixon; James Barber; Radek Kaňa; Egbert J Boekema; Joanna Kargul
Journal:  J Biol Chem       Date:  2013-06-17       Impact factor: 5.157

4.  All the O2 Consumed by Thermus thermophilus Cytochrome ba3 Is Delivered to the Active Site through a Long, Open Hydrophobic Tunnel with Entrances within the Lipid Bilayer.

Authors:  Paween Mahinthichaichan; Robert B Gennis; Emad Tajkhorshid
Journal:  Biochemistry       Date:  2016-02-18       Impact factor: 3.162

5.  High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action.

Authors:  Igor Melnikov; Philipp Orekhov; Maksim Rulev; Kirill Kovalev; Roman Astashkin; Dmitriy Bratanov; Yury Ryzhykau; Taras Balandin; Sergei Bukhdruker; Ivan Okhrimenko; Valentin Borshchevskiy; Gleb Bourenkov; Christoph Mueller-Dieckmann; Peter van der Linden; Philippe Carpentier; Gordon Leonard; Valentin Gordeliy; Alexander Popov
Journal:  Commun Biol       Date:  2022-04-14

6.  Crystal structure of CyanoQ from the thermophilic cyanobacterium Thermosynechococcus elongatus and detection in isolated photosystem II complexes.

Authors:  Franck Michoux; Marko Boehm; Wojciech Bialek; Kenji Takasaka; Karim Maghlaoui; James Barber; James W Murray; Peter J Nixon
Journal:  Photosynth Res       Date:  2014-05-18       Impact factor: 3.573

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.