Literature DB >> 18838690

Structural insights from a P450 Carrier Protein complex reveal how specificity is achieved in the P450(BioI) ACP complex.

Max J Cryle1, Ilme Schlichting.   

Abstract

Cytochrome P450(BioI) (CYP107H1) from the biotin operon of Bacillus subtilis forms a seven-carbon diacid through a multistep oxidative cleavage of a fatty acid linked to acyl carrier protein (ACP). Crystal structures of P450(BioI) in complex with three different length fatty acyl-ACP (Escherichia coli) ligands show that P450(BioI) binds the fatty acid such as to force the carbon chain into a U-shape above the active site heme. This positions the C7 and C8 carbons for oxidation, with a large additional cavity extending beyond the heme to accommodate the methyl termini of fatty acids beyond the site of cleavage. The structures explain the experimentally observed lack of stereo- and regiospecificity in the hydroxylation and cleavage of free fatty acids. The P450(BioI)-ACP complexes represent the only structurally characterized P450-carrier protein complexes to date, which has allowed the generation of a model of the interaction of the vancomycin biosynthetic P450 OxyB with its proposed carrier protein bound substrate.

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Year:  2008        PMID: 18838690      PMCID: PMC2572933          DOI: 10.1073/pnas.0805983105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  An oxidative phenol coupling reaction catalyzed by oxyB, a cytochrome P450 from the vancomycin-producing microorganism.

Authors:  Katja Zerbe; Katharina Woithe; Dong Bo Li; Francesca Vitali; Laurent Bigler; John A Robinson
Journal:  Angew Chem Int Ed Engl       Date:  2004-12-10       Impact factor: 15.336

2.  Substrate recognition sites in cytochrome P450 family 2 (CYP2) proteins inferred from comparative analyses of amino acid and coding nucleotide sequences.

Authors:  O Gotoh
Journal:  J Biol Chem       Date:  1992-01-05       Impact factor: 5.157

3.  Cloning, sequencing, and characterization of the Bacillus subtilis biotin biosynthetic operon.

Authors:  S Bower; J B Perkins; R R Yocum; C L Howitt; P Rahaim; J Pero
Journal:  J Bacteriol       Date:  1996-07       Impact factor: 3.490

4.  Expression, purification, and characterization of BioI: a carbon-carbon bond cleaving cytochrome P450 involved in biotin biosynthesis in Bacillus subtilis.

Authors:  J E Stok; J De Voss
Journal:  Arch Biochem Biophys       Date:  2000-12-15       Impact factor: 4.013

5.  The complete genome sequence of Bacillus licheniformis DSM13, an organism with great industrial potential.

Authors:  Birgit Veith; Christina Herzberg; Silke Steckel; Jörg Feesche; Karl Heinz Maurer; Petra Ehrenreich; Sebastian Bäumer; Anke Henne; Heiko Liesegang; Rainer Merkl; Armin Ehrenreich; Gerhard Gottschalk
Journal:  J Mol Microbiol Biotechnol       Date:  2004

6.  The 2.6-A crystal structure of Pseudomonas putida cytochrome P-450.

Authors:  T L Poulos; B C Finzel; I C Gunsalus; G C Wagner; J Kraut
Journal:  J Biol Chem       Date:  1985-12-25       Impact factor: 5.157

7.  Crystal structure of OxyB, a cytochrome P450 implicated in an oxidative phenol coupling reaction during vancomycin biosynthesis.

Authors:  Katja Zerbe; Olena Pylypenko; Francesca Vitali; Weiwen Zhang; Severine Rouset; Markus Heck; Jan W Vrijbloed; Daniel Bischoff; Bojan Bister; Roderich D Süssmuth; Stefan Pelzer; Wolfgang Wohlleben; John A Robinson; Ilme Schlichting
Journal:  J Biol Chem       Date:  2002-08-30       Impact factor: 5.157

8.  Crystal structure of OxyC, a cytochrome P450 implicated in an oxidative C-C coupling reaction during vancomycin biosynthesis.

Authors:  Olena Pylypenko; Francesca Vitali; Katja Zerbe; John A Robinson; Ilme Schlichting
Journal:  J Biol Chem       Date:  2003-07-29       Impact factor: 5.157

9.  Structural and functional characterization of gene clusters directing nonribosomal synthesis of bioactive cyclic lipopeptides in Bacillus amyloliquefaciens strain FZB42.

Authors:  Alexandra Koumoutsi; Xiao-Hua Chen; Anke Henne; Heiko Liesegang; Gabriele Hitzeroth; Peter Franke; Joachim Vater; Rainer Borriss
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

10.  Complete genome sequence of the industrial bacterium Bacillus licheniformis and comparisons with closely related Bacillus species.

Authors:  Michael W Rey; Preethi Ramaiya; Beth A Nelson; Shari D Brody-Karpin; Elizabeth J Zaretsky; Maria Tang; Alfredo Lopez de Leon; Henry Xiang; Veronica Gusti; Ib Groth Clausen; Peter B Olsen; Michael D Rasmussen; Jens T Andersen; Per L Jørgensen; Thomas S Larsen; Alexei Sorokin; Alexander Bolotin; Alla Lapidus; Nathalie Galleron; S Dusko Ehrlich; Randy M Berka
Journal:  Genome Biol       Date:  2004-09-13       Impact factor: 13.583

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  53 in total

Review 1.  Conformational plasticity and structure/function relationships in cytochromes P450.

Authors:  Thomas C Pochapsky; Sophia Kazanis; Marina Dang
Journal:  Antioxid Redox Signal       Date:  2010-10       Impact factor: 8.401

2.  Structure-based analysis of the molecular interactions between acyltransferase and acyl carrier protein in vicenistatin biosynthesis.

Authors:  Akimasa Miyanaga; Shohei Iwasawa; Yuji Shinohara; Fumitaka Kudo; Tadashi Eguchi
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

3.  Crystallization and preliminary X-ray diffraction studies of vitamin D3 hydroxylase, a novel cytochrome P450 isolated from Pseudonocardia autotrophica.

Authors:  Yoshiaki Yasutake; Yoshikazu Fujii; Woo Kwang Cheon; Akira Arisawa; Tomohiro Tamura
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-03-25

4.  Insights into Thiotemplated Pyrrole Biosynthesis Gained from the Crystal Structure of Flavin-Dependent Oxidase in Complex with Carrier Protein.

Authors:  Hem R Thapa; John M Robbins; Bradley S Moore; Vinayak Agarwal
Journal:  Biochemistry       Date:  2019-01-23       Impact factor: 3.162

5.  Pimelic acid, the first precursor of the Bacillus subtilis biotin synthesis pathway, exists as the free acid and is assembled by fatty acid synthesis.

Authors:  Miglena Manandhar; John E Cronan
Journal:  Mol Microbiol       Date:  2017-03-03       Impact factor: 3.501

6.  Isolation and structure elucidation of lipopeptide antibiotic taromycin B from the activated taromycin biosynthetic gene cluster.

Authors:  Kirk A Reynolds; Hanna Luhavaya; Jie Li; Samira Dahesh; Victor Nizet; Kazuya Yamanaka; Bradley S Moore
Journal:  J Antibiot (Tokyo)       Date:  2017-11-29       Impact factor: 2.649

Review 7.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

8.  Chimeric Fatty Acyl-Acyl Carrier Protein Thioesterases Provide Mechanistic Insight into Enzyme Specificity and Expression.

Authors:  Marika Ziesack; Nathan Rollins; Aashna Shah; Brendon Dusel; Gordon Webster; Pamela A Silver; Jeffrey C Way
Journal:  Appl Environ Microbiol       Date:  2018-05-01       Impact factor: 4.792

9.  Biotin synthesis begins by hijacking the fatty acid synthetic pathway.

Authors:  Steven Lin; Ryan E Hanson; John E Cronan
Journal:  Nat Chem Biol       Date:  2010-08-08       Impact factor: 15.040

10.  A Promiscuous Cytochrome P450 Hydroxylates Aliphatic and Aromatic C-H Bonds of Aromatic 2,5-Diketopiperazines.

Authors:  Guangde Jiang; Yi Zhang; Magan M Powell; Sarah M Hylton; Nicholas W Hiller; Rosemary Loria; Yousong Ding
Journal:  Chembiochem       Date:  2019-03-27       Impact factor: 3.164

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