Literature DB >> 18832158

Structure of the human voltage-dependent anion channel.

Monika Bayrhuber1, Thomas Meins, Michael Habeck, Stefan Becker, Karin Giller, Saskia Villinger, Clemens Vonrhein, Christian Griesinger, Markus Zweckstetter, Kornelius Zeth.   

Abstract

The voltage-dependent anion channel (VDAC), also known as mitochondrial porin, is the most abundant protein in the mitochondrial outer membrane (MOM). VDAC is the channel known to guide the metabolic flux across the MOM and plays a key role in mitochondrially induced apoptosis. Here, we present the 3D structure of human VDAC1, which was solved conjointly by NMR spectroscopy and x-ray crystallography. Human VDAC1 (hVDAC1) adopts a beta-barrel architecture composed of 19 beta-strands with an alpha-helix located horizontally midway within the pore. Bioinformatic analysis indicates that this channel architecture is common to all VDAC proteins and is adopted by the general import pore TOM40 of mammals, which is also located in the MOM.

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Year:  2008        PMID: 18832158      PMCID: PMC2557026          DOI: 10.1073/pnas.0808115105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Machinery for protein sorting and assembly in the mitochondrial outer membrane.

Authors:  Nils Wiedemann; Vera Kozjak; Agnieszka Chacinska; Birgit Schönfisch; Sabine Rospert; Michael T Ryan; Nikolaus Pfanner; Chris Meisinger
Journal:  Nature       Date:  2003-07-31       Impact factor: 49.962

2.  Interstrand pairing patterns in beta-barrel membrane proteins: the positive-outside rule, aromatic rescue, and strand registration prediction.

Authors:  Ronald Jackups; Jie Liang
Journal:  J Mol Biol       Date:  2005-10-21       Impact factor: 5.469

3.  Inferential structure determination.

Authors:  Wolfgang Rieping; Michael Habeck; Michael Nilges
Journal:  Science       Date:  2005-07-08       Impact factor: 47.728

Review 4.  The voltage-dependent anion channel (VDAC): function in intracellular signalling, cell life and cell death.

Authors:  V Shoshan-Barmatz; A Israelson; D Brdiczka; S S Sheu
Journal:  Curr Pharm Des       Date:  2006       Impact factor: 3.116

5.  Gene duplication of the eight-stranded beta-barrel OmpX produces a functional pore: a scenario for the evolution of transmembrane beta-barrels.

Authors:  Thomas Arnold; Melissa Poynor; Stephan Nussberger; Andrei N Lupas; Dirk Linke
Journal:  J Mol Biol       Date:  2006-12-16       Impact factor: 5.469

6.  Mapping of residues forming the voltage sensor of the voltage-dependent anion-selective channel.

Authors:  L Thomas; E Blachly-Dyson; M Colombini; M Forte
Journal:  Proc Natl Acad Sci U S A       Date:  1993-06-15       Impact factor: 11.205

7.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  Reconstitution in planar lipid bilayers of a voltage-dependent anion-selective channel obtained from paramecium mitochondria.

Authors:  S J Schein; M Colombini; A Finkelstein
Journal:  J Membr Biol       Date:  1976-12-28       Impact factor: 1.843

9.  Considerations for the refinement of low-resolution crystal structures.

Authors:  Byron DeLaBarre; Axel T Brunger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

10.  Circular dichroism studies of the mitochondrial channel, VDAC, from Neurospora crassa.

Authors:  L Shao; K W Kinnally; C A Mannella
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

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  201 in total

1.  High-resolution membrane protein structure by joint calculations with solid-state NMR and X-ray experimental data.

Authors:  Ming Tang; Lindsay J Sperling; Deborah A Berthold; Charles D Schwieters; Anna E Nesbitt; Andrew J Nieuwkoop; Robert B Gennis; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-09-22       Impact factor: 2.835

2.  Structure-based analysis of VDAC1 protein: defining oligomer contact sites.

Authors:  Shay Geula; Hammad Naveed; Jie Liang; Varda Shoshan-Barmatz
Journal:  J Biol Chem       Date:  2011-11-23       Impact factor: 5.157

3.  Bacterial expression, purification and characterization of a rice voltage-dependent, anion-selective channel isoform, OsVDAC4.

Authors:  Ashwini Godbole; Rohan Mitra; Ashvini K Dubey; Palakolanu S Reddy; M K Mathew
Journal:  J Membr Biol       Date:  2011-11-06       Impact factor: 1.843

4.  Affixing N-terminal α-helix to the wall of the voltage-dependent anion channel does not prevent its voltage gating.

Authors:  Oscar Teijido; Rachna Ujwal; Carl-Olof Hillerdal; Lisen Kullman; Tatiana K Rostovtseva; Jeff Abramson
Journal:  J Biol Chem       Date:  2012-01-24       Impact factor: 5.157

Review 5.  Structures of membrane proteins.

Authors:  Kutti R Vinothkumar; Richard Henderson
Journal:  Q Rev Biophys       Date:  2010-02       Impact factor: 5.318

6.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

7.  Voltage dependent anion channel-1 (VDAC-1) as an anti-cancer target.

Authors:  Saroj P Mathupala; Peter L Pedersen
Journal:  Cancer Biol Ther       Date:  2010-06-21       Impact factor: 4.742

8.  Functional dynamics in the voltage-dependent anion channel.

Authors:  Saskia Villinger; Rodolfo Briones; Karin Giller; Ulrich Zachariae; Adam Lange; Bert L de Groot; Christian Griesinger; Stefan Becker; Markus Zweckstetter
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-10       Impact factor: 11.205

Review 9.  Common ground for protein translocation: access control for mitochondria and chloroplasts.

Authors:  Enrico Schleiff; Thomas Becker
Journal:  Nat Rev Mol Cell Biol       Date:  2010-12-08       Impact factor: 94.444

10.  Modulation of plant mitochondrial VDAC by phytosterols.

Authors:  Lamia Mlayeh; Sunita Chatkaew; Marc Léonetti; Fabrice Homblé
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

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