Literature DB >> 18824272

Primordial spliceosomal introns were probably U2-type.

Malay Kumar Basu1, Igor B Rogozin, Eugene V Koonin.   

Abstract

The two types of eukaryotic spliceosomal introns, U2 and U12, possess different splice signals and are excised by distinct spliceosomes. The nature of the primordial introns remains uncertain. A comparison of the amino acid distributions at insertion sites of introns that retained their positions throughout eukaryotic evolution with the distributions for human and Arabidopsis thaliana U2 and U12 introns reveals close similarity with U2 but not U12. Thus, the primordial spliceosomal introns were, most likely, U2-type.

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Year:  2008        PMID: 18824272      PMCID: PMC3381341          DOI: 10.1016/j.tig.2008.09.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  20 in total

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Authors:  Patrick J Keeling; Gertraud Burger; Dion G Durnford; B Franz Lang; Robert W Lee; Ronald E Pearlman; Andrew J Roger; Michael W Gray
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2.  An early evolutionary origin for the minor spliceosome.

Authors:  Anthony G Russell; J Michael Charette; David F Spencer; Michael W Gray
Journal:  Nature       Date:  2006-10-19       Impact factor: 49.962

Review 3.  A reappraisal of non-consensus mRNA splice sites.

Authors:  I J Jackson
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

4.  Evolutionary fates and origins of U12-type introns.

Authors:  C B Burge; R A Padgett; P A Sharp
Journal:  Mol Cell       Date:  1998-12       Impact factor: 17.970

5.  A novel spliceosome containing U11, U12, and U5 snRNPs excises a minor class (AT-AC) intron in vitro.

Authors:  W Y Tarn; J A Steitz
Journal:  Cell       Date:  1996-03-08       Impact factor: 41.582

Review 6.  Splicing of messenger RNA precursors.

Authors:  R A Padgett; P J Grabowski; M M Konarska; S Seiler; P A Sharp
Journal:  Annu Rev Biochem       Date:  1986       Impact factor: 23.643

7.  Analysis of donor splice sites in different eukaryotic organisms.

Authors:  I B Rogozin; L Milanesi
Journal:  J Mol Evol       Date:  1997-07       Impact factor: 2.395

8.  Requirement of U12 snRNA for in vivo splicing of a minor class of eukaryotic nuclear pre-mRNA introns.

Authors:  S L Hall; R A Padgett
Journal:  Science       Date:  1996-03-22       Impact factor: 47.728

9.  Evidence that introns arose at proto-splice sites.

Authors:  N J Dibb; A J Newman
Journal:  EMBO J       Date:  1989-07       Impact factor: 11.598

10.  Comprehensive splice-site analysis using comparative genomics.

Authors:  Nihar Sheth; Xavier Roca; Michelle L Hastings; Ted Roeder; Adrian R Krainer; Ravi Sachidanandam
Journal:  Nucleic Acids Res       Date:  2006-08-12       Impact factor: 16.971

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  11 in total

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Authors:  Manuel Irimia; Scott William Roy
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-06-02       Impact factor: 10.005

2.  Analysis of rare genomic changes does not support the unikont-bikont phylogeny and suggests cyanobacterial symbiosis as the point of primary radiation of eukaryotes.

Authors:  Igor B Rogozin; Malay Kumar Basu; Miklós Csürös; Eugene V Koonin
Journal:  Genome Biol Evol       Date:  2009-05-25       Impact factor: 3.416

3.  Evolutionary dynamics of U12-type spliceosomal introns.

Authors:  Chiao-Feng Lin; Stephen M Mount; Artur Jarmołowski; Wojciech Makałowski
Journal:  BMC Evol Biol       Date:  2010-02-17       Impact factor: 3.260

Review 4.  Origin and evolution of spliceosomal introns.

Authors:  Igor B Rogozin; Liran Carmel; Miklos Csuros; Eugene V Koonin
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5.  Evolutionarily divergent spliceosomal snRNAs and a conserved non-coding RNA processing motif in Giardia lamblia.

Authors:  Andrew J Hudson; Ashley N Moore; David Elniski; Joella Joseph; Janet Yee; Anthony G Russell
Journal:  Nucleic Acids Res       Date:  2012-09-27       Impact factor: 16.971

6.  A late origin of the extant eukaryotic diversity: divergence time estimates using rare genomic changes.

Authors:  Diana Chernikova; Sam Motamedi; Miklós Csürös; Eugene V Koonin; Igor B Rogozin
Journal:  Biol Direct       Date:  2011-05-19       Impact factor: 4.540

7.  U12-type spliceosomal introns of Insecta.

Authors:  Jessin Janice; Amit Pande; January Weiner; Chiao-Feng Lin; Wojciech Makałowski
Journal:  Int J Biol Sci       Date:  2012-02-17       Impact factor: 6.580

Review 8.  The significant other: splicing by the minor spliceosome.

Authors:  Janne J Turunen; Elina H Niemelä; Bhupendra Verma; Mikko J Frilander
Journal:  Wiley Interdiscip Rev RNA       Date:  2012-10-16       Impact factor: 9.957

Review 9.  Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery.

Authors:  Julian Vosseberg; Berend Snel
Journal:  Biol Direct       Date:  2017-12-01       Impact factor: 4.540

10.  Comprehensive database and evolutionary dynamics of U12-type introns.

Authors:  Devlin C Moyer; Graham E Larue; Courtney E Hershberger; Scott W Roy; Richard A Padgett
Journal:  Nucleic Acids Res       Date:  2020-07-27       Impact factor: 16.971

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