Literature DB >> 18822366

Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis.

Iuliana Ionita-Laza1, Angela J Rogers, Christoph Lange, Benjamin A Raby, Charles Lee.   

Abstract

Structural genetic variation, including copy-number variation (CNV), constitutes a substantial fraction of total genetic variability and the importance of structural genetic variants in modulating human disease is increasingly being recognized. Early successes in identifying disease-associated CNVs via a candidate gene approach mandate that future disease association studies need to include structural genetic variation. Such analyses should not rely on previously developed methodologies that were designed to evaluate single nucleotide polymorphisms (SNPs). Instead, development of novel technical, statistical, and epidemiologic methods will be necessary to optimally capture this newly-appreciated form of genetic variation in a meaningful manner.

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Year:  2008        PMID: 18822366      PMCID: PMC2631358          DOI: 10.1016/j.ygeno.2008.08.012

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  53 in total

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Authors:  Jane R Townson; Lisa F Barcellos; Robert J B Nibbs
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3.  On a general class of conditional tests for family-based association studies in genetics: the asymptotic distribution, the conditional power, and optimality considerations.

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4.  High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides.

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5.  The effects of human population structure on large genetic association studies.

Authors:  Jonathan Marchini; Lon R Cardon; Michael S Phillips; Peter Donnelly
Journal:  Nat Genet       Date:  2004-03-28       Impact factor: 38.330

6.  A new powerful non-parametric two-stage approach for testing multiple phenotypes in family-based association studies.

Authors:  Christoph Lange; Helen Lyon; Dawn DeMeo; Benjamin Raby; Edwin K Silverman; Scott T Weiss
Journal:  Hum Hered       Date:  2003       Impact factor: 0.444

7.  Glutathione S-transferase genotypes and allergic responses to diisocyanate exposure.

Authors:  P Piirilä; H Wikman; R Luukkonen; K Kääriä; C Rosenberg; H Nordman; H Norppa; H Vainio; A Hirvonen
Journal:  Pharmacogenetics       Date:  2001-07

8.  Glutathione- S-transferase micro and theta gene polymorphisms as new risk factors of atopic bronchial asthma.

Authors:  T E Ivaschenko; O G Sideleva; V S Baranov
Journal:  J Mol Med (Berl)       Date:  2001-09-06       Impact factor: 4.599

9.  Diet and the evolution of human amylase gene copy number variation.

Authors:  George H Perry; Nathaniel J Dominy; Katrina G Claw; Arthur S Lee; Heike Fiegler; Richard Redon; John Werner; Fernando A Villanea; Joanna L Mountain; Rajeev Misra; Nigel P Carter; Charles Lee; Anne C Stone
Journal:  Nat Genet       Date:  2007-09-09       Impact factor: 38.330

10.  Large-scale copy number polymorphism in the human genome.

Authors:  Jonathan Sebat; B Lakshmi; Jennifer Troge; Joan Alexander; Janet Young; Pär Lundin; Susanne Månér; Hillary Massa; Megan Walker; Maoyen Chi; Nicholas Navin; Robert Lucito; John Healy; James Hicks; Kenny Ye; Andrew Reiner; T Conrad Gilliam; Barbara Trask; Nick Patterson; Anders Zetterberg; Michael Wigler
Journal:  Science       Date:  2004-07-23       Impact factor: 47.728

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  83 in total

1.  Investigation of genetic factors underlying typical orofacial clefts: mutational screening and copy number variation.

Authors:  Milena Simioni; Tânia Kawasaki Araujo; Isabella Lopes Monlleo; Cláudia Vianna Maurer-Morelli; Vera Lúcia Gil-da-Silva-Lopes
Journal:  J Hum Genet       Date:  2014-11-13       Impact factor: 3.172

2.  Ohnologs in the human genome are dosage balanced and frequently associated with disease.

Authors:  Takashi Makino; Aoife McLysaght
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

3.  Copy number variation modifies expression time courses.

Authors:  Evelyne Chaignat; Emilie Aït Yahya-Graison; Charlotte N Henrichsen; Jacqueline Chrast; Frédéric Schütz; Sylvain Pradervand; Alexandre Reymond
Journal:  Genome Res       Date:  2010-11-17       Impact factor: 9.043

Review 4.  Systems biology and heart failure: concepts, methods, and potential research applications.

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Journal:  Heart Fail Rev       Date:  2010-07       Impact factor: 4.214

Review 5.  Genome-wide association studies and the genetic dissection of complex traits.

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6.  Copy number variations and cancer.

Authors:  Adam Shlien; David Malkin
Journal:  Genome Med       Date:  2009-06-16       Impact factor: 11.117

7.  Early embryonic chromosome instability results in stable mosaic pattern in human tissues.

Authors:  Hasmik Mkrtchyan; Madeleine Gross; Sophie Hinreiner; Anna Polytiko; Marina Manvelyan; Kristin Mrasek; Nadezda Kosyakova; Elisabeth Ewers; Heike Nelle; Thomas Liehr; Marianne Volleth; Anja Weise
Journal:  PLoS One       Date:  2010-03-09       Impact factor: 3.240

8.  A classification model for distinguishing copy number variants from cancer-related alterations.

Authors:  Irina Ostrovnaya; Gouri Nanjangud; Adam B Olshen
Journal:  BMC Bioinformatics       Date:  2010-06-02       Impact factor: 3.169

9.  A copy number variation in human NCF1 and its pseudogenes.

Authors:  Tiffany Brunson; Qingwei Wang; Isfahan Chambers; Qing Song
Journal:  BMC Genet       Date:  2010-02-23       Impact factor: 2.797

10.  Accounting for uncertainty when assessing association between copy number and disease: a latent class model.

Authors:  Juan R González; Isaac Subirana; Geòrgia Escaramís; Solymar Peraza; Alejandro Cáceres; Xavier Estivill; Lluís Armengol
Journal:  BMC Bioinformatics       Date:  2009-06-06       Impact factor: 3.169

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