Literature DB >> 18821776

Switch from conventional to distributed kinetics in the bacteriorhodopsin photocycle.

Andrei K Dioumaev1, Janos K Lanyi.   

Abstract

Below 195 K, the bacteriorhodopsin photocycle could not be adequately described with exponential kinetics [Dioumaev, A. K., and Lanyi, J. K. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 9621-9626] but required distributed kinetics, previously found in hemoglobin and myoglobin at temperatures below the vitrification point of the surrounding solvent. The aim of this study is to determine which factors cause the switch from this low-temperature regime to the conventional kinetics observed at ambient temperature. The photocycle was monitored by time-resolved FTIR between 180 and 280 K, using the D96N mutant. Depending on the temperature, decay and temporal redistribution of two or three intermediates (L, M, and N) were observed. Above approximately 245 K, an abrupt change in the kinetic behavior of the photocycle takes place. It does not affect the intermediates present but greatly accelerates their decay. Below approximately 240 K, a kinetic pattern with partial decay that cannot be explained by conventional kinetics, but suggesting distributed kinetics, was dominant, while above approximately 250 K, there were no significant deviations from exponential behavior. The approximately 245 K critical point is >/=10 K below the freezing point of interbilayer water, and we were unable to correlate it with any FTIR-detectable transition of the lipids. Therefore, we attribute the change from distributed to conventional kinetics to a thermodynamic phase transition in the protein. Most probably, it is related to the freezing and thawing of internal fluctuations of the protein, known as the dynamic phase transition, although in bacteriorhodopsin the latter is usually believed to take place at least 15 K below the observed critical temperature of approximately 245 K.

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Year:  2008        PMID: 18821776      PMCID: PMC2692533          DOI: 10.1021/bi801247e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  40 in total

1.  Infrared methods for monitoring the protonation state of carboxylic amino acids in the photocycle of bacteriorhodopsin.

Authors:  A K Dioumaev
Journal:  Biochemistry (Mosc)       Date:  2001-11       Impact factor: 2.487

Review 2.  Trapping and spectroscopic identification of the photointermediates of bacteriorhodopsin at low temperatures.

Authors:  S P Balashov; T G Ebrey
Journal:  Photochem Photobiol       Date:  2001-05       Impact factor: 3.421

3.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

4.  Bacteriorhodopsin photocycle kinetics analyzed by the maximum entropy method.

Authors:  A Lukács; E Papp
Journal:  J Photochem Photobiol B       Date:  2004-12-02       Impact factor: 6.252

5.  Evaluation of intrinsic chemical kinetics and transient product spectra from time-resolved spectroscopic data.

Authors:  A K Dioumaev
Journal:  Biophys Chem       Date:  1997-09-01       Impact factor: 2.352

6.  Active internal waters in the bacteriorhodopsin photocycle. A comparative study of the L and M intermediates at room and cryogenic temperatures by infrared spectroscopy.

Authors:  Víctor A Lórenz-Fonfría; Yuji Furutani; Hideki Kandori
Journal:  Biochemistry       Date:  2008-03-06       Impact factor: 3.162

7.  Internal molecular motions of bacteriorhodopsin: hydration-induced flexibility studied by quasielastic incoherent neutron scattering using oriented purple membranes.

Authors:  J Fitter; R E Lechner; G Buldt; N A Dencher
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-23       Impact factor: 11.205

8.  Pathways of the rise and decay of the M photointermediate(s) of bacteriorhodopsin.

Authors:  G Váró; J K Lanyi
Journal:  Biochemistry       Date:  1990-03-06       Impact factor: 3.162

9.  Pathway of proton uptake in the bacteriorhodopsin photocycle.

Authors:  L Zimányi; Y Cao; R Needleman; M Ottolenghi; J K Lanyi
Journal:  Biochemistry       Date:  1993-08-03       Impact factor: 3.162

10.  Liquid-like water confined in stacks of biological membranes at 200 k and its relation to protein dynamics.

Authors:  M Weik; U Lehnert; G Zaccai
Journal:  Biophys J       Date:  2005-07-29       Impact factor: 4.033

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  5 in total

1.  Two bathointermediates of the bacteriorhodopsin photocycle, from time-resolved nanosecond spectra in the visible.

Authors:  Andrei K Dioumaev; Janos K Lanyi
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

2.  Low-temperature FTIR study of multiple K intermediates in the photocycles of bacteriorhodopsin and xanthorhodopsin.

Authors:  Andrei K Dioumaev; Jennifer M Wang; Janos K Lanyi
Journal:  J Phys Chem B       Date:  2010-03-04       Impact factor: 2.991

3.  Photocycle of Exiguobacterium sibiricum rhodopsin characterized by low-temperature trapping in the IR and time-resolved studies in the visible.

Authors:  Andrei K Dioumaev; Lada E Petrovskaya; Jennifer M Wang; Sergei P Balashov; Dmitriy A Dolgikh; Mikhail P Kirpichnikov; Janos K Lanyi
Journal:  J Phys Chem B       Date:  2013-06-10       Impact factor: 2.991

4.  Infrared monitoring of interlayer water in stacks of purple membranes.

Authors:  Andrei K Dioumaev; Janos K Lanyi
Journal:  Photochem Photobiol       Date:  2009-01-19       Impact factor: 3.421

5.  Light-driven Na(+) pump from Gillisia limnaea: a high-affinity Na(+) binding site is formed transiently in the photocycle.

Authors:  Sergei P Balashov; Eleonora S Imasheva; Andrei K Dioumaev; Jennifer M Wang; Kwang-Hwan Jung; Janos K Lanyi
Journal:  Biochemistry       Date:  2014-11-24       Impact factor: 3.162

  5 in total

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