Literature DB >> 1881877

1.59 A structure of trypsin at 120 K: comparison of low temperature and room temperature structures.

T Earnest1, E Fauman, C S Craik, R Stroud.   

Abstract

The structure of a rat trypsin mutant [S195C] at a temperature of 120 K has been refined to a crystallographic R factor of 17.4% between 12.0 and 1.59 A and is compared with the structure of the D102N mutant at 295 K. A reduction in the unit cell dimensions in going from room temperature to low temperature is accompanied by a decrease in molecular surface area and radius of gyration. The overall structure remains similar to that at room temperature. The attainable resolution appears to be improved due to the decrease in the fall off of intensities with resolution [reduction of the temperature factor]. This decreases the uncertainty in the atomic positions and allows the localization of more protein atoms and solvent molecules in the low temperature map. The largest differences between the two models occur at residues with higher than average temperature factors. Several features can be localized in the solvent region of the 120 K map that are not seen in the 295 K map. These include several more water molecules as well as an interstitial sulfate ion and two interstitial benzamidine molecules.

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Year:  1991        PMID: 1881877     DOI: 10.1002/prot.340100303

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  7 in total

1.  Hyperquenching for protein cryocrystallography.

Authors:  Matthew Warkentin; Viatcheslav Berejnov; Naji S Husseini; Robert E Thorne
Journal:  J Appl Crystallogr       Date:  2006-12-01       Impact factor: 3.304

2.  Conformational substates in enzyme mechanism: the 120 K structure of alpha-lytic protease at 1.5 A resolution.

Authors:  S D Rader; D A Agard
Journal:  Protein Sci       Date:  1997-07       Impact factor: 6.725

3.  Structure of d(CCGGGACCGG)4 as a four-way junction at 1.6 Å resolution: new insights into solvent interactions.

Authors:  Arka Chakraborty; Pradeep Kumar Mandal; Namasivayam Gautham
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-09-25

4.  Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity.

Authors:  P C Sanschagrin; L A Kuhn
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

5.  Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation.

Authors:  Hisashi Naitow; Yoshinori Matsuura; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Rie Tanaka; Tomoyuki Tanaka; Michihiro Sugahara; Jun Kobayashi; Eriko Nango; So Iwata; Naoki Kunishima
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-07-31       Impact factor: 7.652

6.  A comparison of gas stream cooling and plunge cooling of macromolecular crystals.

Authors:  Kaitlin Harrison; Zhenguo Wu; Douglas H Juers
Journal:  J Appl Crystallogr       Date:  2019-08-23       Impact factor: 3.304

7.  Comparison of side-chain dispersion in protein structures determined by cryo-EM and X-ray crystallography.

Authors:  Ashraya Ravikumar; Mrugsen Nagsen Gopnarayan; Sriram Subramaniam; Narayanaswamy Srinivasan
Journal:  IUCrJ       Date:  2021-12-10       Impact factor: 4.769

  7 in total

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