Literature DB >> 18815224

Anisotropic diffusion of fluorescently labeled ATP in rat cardiomyocytes determined by raster image correlation spectroscopy.

Marko Vendelin1, Rikke Birkedal.   

Abstract

A series of experimental data points to the existence of profound diffusion restrictions of ADP/ATP in rat cardiomyocytes. This assumption is required to explain the measurements of kinetics of respiration, sarcoplasmic reticulum loading with calcium, and kinetics of ATP-sensitive potassium channels. To be able to analyze and estimate the role of intracellular diffusion restrictions on bioenergetics, the intracellular diffusion coefficients of metabolites have to be determined. The aim of this work was to develop a practical method for determining diffusion coefficients in anisotropic medium and to estimate the overall diffusion coefficients of fluorescently labeled ATP in rat cardiomyocytes. For that, we have extended raster image correlation spectroscopy (RICS) protocols to be able to discriminate the anisotropy in the diffusion coefficient tensor. Using this extended protocol, we estimated diffusion coefficients of ATP labeled with the fluorescent conjugate Alexa Fluor 647 (Alexa-ATP). In the analysis, we assumed that the diffusion tensor can be described by two values: diffusion coefficient along the myofibril and that across it. The average diffusion coefficients found for Alexa-ATP were as follows: 83 +/- 14 microm(2)/s in the longitudinal and 52 +/- 16 microm(2)/s in the transverse directions (n = 8, mean +/- SD). Those values are approximately 2 (longitudinal) and approximately 3.5 (transverse) times smaller than the diffusion coefficient value estimated for the surrounding solution. Such uneven reduction of average diffusion coefficient leads to anisotropic diffusion in rat cardiomyocytes. Although the source for such anisotropy is uncertain, we speculate that it may be induced by the ordered pattern of intracellular structures in rat cardiomyocytes.

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Year:  2008        PMID: 18815224      PMCID: PMC2584976          DOI: 10.1152/ajpcell.00313.2008

Source DB:  PubMed          Journal:  Am J Physiol Cell Physiol        ISSN: 0363-6143            Impact factor:   4.249


  37 in total

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Journal:  Am J Physiol Cell Physiol       Date:  2000-04       Impact factor: 4.249

2.  Mitochondrial regular arrangement in muscle cells: a "crystal-like" pattern.

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Journal:  Am J Physiol Cell Physiol       Date:  2004-10-20       Impact factor: 4.249

3.  New fluorescence correlation spectroscopy enabling direct observation of spatiotemporal dependence of diffusion constants as an evidence of anomalous transport in extracellular matrices.

Authors:  Akiko Masuda; Kiminori Ushida; Takayuki Okamoto
Journal:  Biophys J       Date:  2005-02-04       Impact factor: 4.033

4.  Fluctuation correlation spectroscopy with a laser-scanning microscope: exploiting the hidden time structure.

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Journal:  Biophys J       Date:  2005-03-25       Impact factor: 4.033

5.  Alteration in the control of mitochondrial respiration by outer mitochondrial membrane and creatine during heart preservation.

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6.  Fluorescence correlation spectroscopy studies of diffusion of a weak polyelectrolyte in aqueous solutions.

Authors:  Denis Pristinski; Veronika Kozlovskaya; Svetlana A Sukhishvili
Journal:  J Chem Phys       Date:  2005-01-01       Impact factor: 3.488

7.  Coupling of cell energetics with membrane metabolic sensing. Integrative signaling through creatine kinase phosphotransfer disrupted by M-CK gene knock-out.

Authors:  M Roselle Abraham; Vitaliy A Selivanov; Denice M Hodgson; Darko Pucar; Leonid V Zingman; Be Wieringa; Petras P Dzeja; Alexey E Alekseev; Andre Terzic
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8.  Anisotropic diffusion in mitral cell dendrites revealed by fluorescence correlation spectroscopy.

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Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

9.  Maximum-entropy decomposition of fluorescence correlation spectroscopy data: application to liposome-human serum albumin association.

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Journal:  Eur Biophys J       Date:  2003-08-30       Impact factor: 1.733

10.  Ca, Mg-ATPase activity of permeabilised rat heart cells and its functional coupling to oxidative phosphorylation of the cells.

Authors:  L Kümmel
Journal:  Cardiovasc Res       Date:  1988-05       Impact factor: 10.787

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  40 in total

1.  Permeabilized rat cardiomyocyte response demonstrates intracellular origin of diffusion obstacles.

Authors:  Natalja Jepihhina; Nathalie Beraud; Mervi Sepp; Rikke Birkedal; Marko Vendelin
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Enzyme localization, crowding, and buffers collectively modulate diffusion-influenced signal transduction: Insights from continuum diffusion modeling.

Authors:  Peter M Kekenes-Huskey; Changsun Eun; J A McCammon
Journal:  J Chem Phys       Date:  2015-09-07       Impact factor: 3.488

3.  Raster image correlation spectroscopy in live cells.

Authors:  Molly J Rossow; Jennifer M Sasaki; Michelle A Digman; Enrico Gratton
Journal:  Nat Protoc       Date:  2010-10-14       Impact factor: 13.491

4.  Mitochondrial dynamics in heart cells: very low amplitude high frequency fluctuations in adult cardiomyocytes and flow motion in non beating Hl-1 cells.

Authors:  Nathalie Beraud; Sophie Pelloux; Yves Usson; Andrey V Kuznetsov; Xavier Ronot; Yves Tourneur; Valdur Saks
Journal:  J Bioenerg Biomembr       Date:  2009-04-28       Impact factor: 2.945

5.  Direct Quantification of Solute Diffusivity in Agarose and Articular Cartilage Using Correlation Spectroscopy.

Authors:  Janty S Shoga; Brian T Graham; Liyun Wang; Christopher Price
Journal:  Ann Biomed Eng       Date:  2017-06-13       Impact factor: 3.934

6.  Molecular and subcellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice.

Authors:  Peter M Kekenes-Huskey; Tao Liao; Andrew K Gillette; Johan E Hake; Yongjie Zhang; Anushka P Michailova; Andrew D McCulloch; J Andrew McCammon
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

7.  Obstructed metabolite diffusion within skeletal muscle cells in silico.

Authors:  Mayis K Aliev; Alexander N Tikhonov
Journal:  Mol Cell Biochem       Date:  2011-06-28       Impact factor: 3.396

Review 8.  Bidirectionality and compartmentation of metabolic fluxes are revealed in the dynamics of isotopomer networks.

Authors:  David W Schryer; Pearu Peterson; Toomas Paalme; Marko Vendelin
Journal:  Int J Mol Sci       Date:  2009-04-17       Impact factor: 6.208

9.  Diffusion restrictions surrounding mitochondria: a mathematical model of heart muscle fibers.

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Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

10.  Strong inference for systems biology.

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Journal:  PLoS Comput Biol       Date:  2009-08-28       Impact factor: 4.475

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