Literature DB >> 18804025

Mass spectrometry and the emerging field of glycomics.

Joseph Zaia1.   

Abstract

The biological significance of protein and pan class="Chemical">lipid glycosylation is well established. For example, cells respond to environmental stimuli by altering n>n class="Chemical">glycan structures on their surfaces, and cancer cells evade normal growth regulation in part by remodeling their surface glycans. In general, glycan chemical properties differ significantly from those of proteins, lipids, nucleic acids, and small molecule metabolites. Thus, advances in glycomics, a comprehensive study to identify all glycans in an organism, rely on the development of specialized analytical methods. Mass spectrometry (MS) is emerging as an enabling technology in the field of glycomics. This review summarizes recent developments in mass spectrometric analysis methods for protein-based glycomics and glycoproteomics workflows.

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Year:  2008        PMID: 18804025      PMCID: PMC2570164          DOI: 10.1016/j.chembiol.2008.07.016

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  102 in total

1.  Structural analysis of underivatized neutral human milk oligosaccharides in the negative ion mode by nano-electrospray MS(n) (part 1: methodology).

Authors:  Anja Pfenninger; Michael Karas; Berndt Finke; Bernd Stahl
Journal:  J Am Soc Mass Spectrom       Date:  2002-11       Impact factor: 3.109

Review 2.  Advances in fluorescence derivatization methods for high-performance liquid chromatographic analysis of glycoprotein carbohydrates.

Authors:  Kalyan R Anumula
Journal:  Anal Biochem       Date:  2005-10-17       Impact factor: 3.365

3.  Distinguishing glucuronic from iduronic acid in glycosaminoglycan tetrasaccharides by using electron detachment dissociation.

Authors:  Jeremy J Wolff; Lianli Chi; Robert J Linhardt; I Jonathan Amster
Journal:  Anal Chem       Date:  2007-01-25       Impact factor: 6.986

4.  Electron detachment dissociation of neutral and sialylated oligosaccharides.

Authors:  Julie T Adamson; Kristina Håkansson
Journal:  J Am Soc Mass Spectrom       Date:  2007-09-14       Impact factor: 3.109

5.  Sequencing complex polysaccharides.

Authors:  G Venkataraman; Z Shriver; R Raman; R Sasisekharan
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

6.  Electron capture dissociation of oligosaccharides ionized with alkali, alkaline Earth, and transition metals.

Authors:  Julie T Adamson; Kristina Håkansson
Journal:  Anal Chem       Date:  2007-03-01       Impact factor: 6.986

7.  Stabilization and linkage analysis of metal-ligated sialic acid containing oligosaccharides.

Authors:  M D Leavell; J A Leary
Journal:  J Am Soc Mass Spectrom       Date:  2001-05       Impact factor: 3.109

8.  Mass + retention time = structure: a strategy for the analysis of N-glycans by carbon LC-ESI-MS and its application to fibrin N-glycans.

Authors:  Martin Pabst; Jayakumar Singh Bondili; Johannes Stadlmann; Lukas Mach; Friedrich Altmann
Journal:  Anal Chem       Date:  2007-06-01       Impact factor: 6.986

9.  Quantitation by isobaric labeling: applications to glycomics.

Authors:  James A Atwood; Lei Cheng; Gerardo Alvarez-Manilla; Nicole L Warren; William S York; Ron Orlando
Journal:  J Proteome Res       Date:  2007-11-30       Impact factor: 4.466

10.  Structural analysis of bikunin glycosaminoglycan.

Authors:  Lianli Chi; Jeremy J Wolff; Tatiana N Laremore; Odile F Restaino; Jin Xie; Chiara Schiraldi; Toshihiko Toida; I Jonathan Amster; Robert J Linhardt
Journal:  J Am Chem Soc       Date:  2008-02-05       Impact factor: 15.419

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  89 in total

1.  A novel method for relative quantitation of N-glycans by isotopic labeling using ¹⁸O-water.

Authors:  Shujuan Tao; Ron Orlando
Journal:  J Biomol Tech       Date:  2014-12

2.  Electron transfer dissociation of milk oligosaccharides.

Authors:  Liang Han; Catherine E Costello
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-14       Impact factor: 3.109

3.  Improved mass spectrometric characterization of protein glycosylation reveals unusual glycosylation of maize-derived bovine trypsin.

Authors:  Hao Zhang; Richard Y C Huang; Pegah R Jalili; Janet W Irungu; Gordon R Nicol; Kevin B Ray; Henry W Rohrs; Michael L Gross
Journal:  Anal Chem       Date:  2010-11-15       Impact factor: 6.986

4.  Energy-resolved ion mobility-mass spectrometry--a concept to improve the separation of isomeric carbohydrates.

Authors:  Waldemar Hoffmann; Johanna Hofmann; Kevin Pagel
Journal:  J Am Soc Mass Spectrom       Date:  2014-01-03       Impact factor: 3.109

Review 5.  Recent advances in ion mobility-mass spectrometry for improved structural characterization of glycans and glycoconjugates.

Authors:  Zhengwei Chen; Matthew S Glover; Lingjun Li
Journal:  Curr Opin Chem Biol       Date:  2017-11-05       Impact factor: 8.822

6.  Serum glycan signatures of gastric cancer.

Authors:  Sureyya Ozcan; Donald A Barkauskas; L Renee Ruhaak; Javier Torres; Cara L Cooke; Hyun Joo An; Serenus Hua; Cynthia C Williams; Lauren M Dimapasoc; Jae Han Kim; Margarita Camorlinga-Ponce; David Rocke; Carlito B Lebrilla; Jay V Solnick
Journal:  Cancer Prev Res (Phila)       Date:  2013-12-10

Review 7.  Capillary electrophoresis-mass spectrometry of carbohydrates.

Authors:  Joseph Zaia
Journal:  Methods Mol Biol       Date:  2013

8.  Salmonella Typhimurium Enzymatically Landscapes the Host Intestinal Epithelial Cell (IEC) Surface Glycome to Increase Invasion.

Authors:  Dayoung Park; Narine Arabyan; Cynthia C Williams; Ting Song; Anupam Mitra; Bart C Weimer; Emanual Maverakis; Carlito B Lebrilla
Journal:  Mol Cell Proteomics       Date:  2016-10-17       Impact factor: 5.911

9.  The effects of abundant plasma protein depletion on global glycan profiling using nanoLC FT-ICR mass spectrometry.

Authors:  Michael S Bereman; David C Muddiman
Journal:  Anal Bioanal Chem       Date:  2010-01-20       Impact factor: 4.142

10.  Shotgun proteomics in neuroscience.

Authors:  Lujian Liao; Daniel B McClatchy; John R Yates
Journal:  Neuron       Date:  2009-07-16       Impact factor: 17.173

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