Literature DB >> 18801435

Ome sweet ome: what can the genome tell us about the connectome?

Jeff W Lichtman1, Joshua R Sanes.   

Abstract

Some neuroscientists argue that detailed maps of synaptic connectivity--wiring diagrams--will be needed if we are to understand how the brain underlies behavior and how brain malfunctions underlie behavioral disorders. Such large-scale circuit reconstruction, which has been called connectomics, may soon be possible, owing to numerous advances in technologies for image acquisition and processing. Yet, the community is divided on the feasibility and value of the enterprise. Remarkably similar objections were voiced when the Human Genome Project, now widely viewed as a success, was first proposed. We revisit that controversy to ask if it holds any lessons for proposals to map the connectome.

Entities:  

Mesh:

Year:  2008        PMID: 18801435      PMCID: PMC2735215          DOI: 10.1016/j.conb.2008.08.010

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  31 in total

1.  The human genome. Controversial from the start.

Authors:  L Roberts
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

2.  The human genome. Objection #1: big biology is bad biology.

Authors:  R F Service
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

3.  The structure of the nervous system of the nematode Caenorhabditis elegans.

Authors:  J G White; E Southgate; J N Thomson; S Brenner
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1986-11-12       Impact factor: 6.237

4.  Genome-wide atlas of gene expression in the adult mouse brain.

Authors:  Ed S Lein; Michael J Hawrylycz; Nancy Ao; Mikael Ayres; Amy Bensinger; Amy Bernard; Andrew F Boe; Mark S Boguski; Kevin S Brockway; Emi J Byrnes; Lin Chen; Li Chen; Tsuey-Ming Chen; Mei Chi Chin; Jimmy Chong; Brian E Crook; Aneta Czaplinska; Chinh N Dang; Suvro Datta; Nick R Dee; Aimee L Desaki; Tsega Desta; Ellen Diep; Tim A Dolbeare; Matthew J Donelan; Hong-Wei Dong; Jennifer G Dougherty; Ben J Duncan; Amanda J Ebbert; Gregor Eichele; Lili K Estin; Casey Faber; Benjamin A Facer; Rick Fields; Shanna R Fischer; Tim P Fliss; Cliff Frensley; Sabrina N Gates; Katie J Glattfelder; Kevin R Halverson; Matthew R Hart; John G Hohmann; Maureen P Howell; Darren P Jeung; Rebecca A Johnson; Patrick T Karr; Reena Kawal; Jolene M Kidney; Rachel H Knapik; Chihchau L Kuan; James H Lake; Annabel R Laramee; Kirk D Larsen; Christopher Lau; Tracy A Lemon; Agnes J Liang; Ying Liu; Lon T Luong; Jesse Michaels; Judith J Morgan; Rebecca J Morgan; Marty T Mortrud; Nerick F Mosqueda; Lydia L Ng; Randy Ng; Geralyn J Orta; Caroline C Overly; Tu H Pak; Sheana E Parry; Sayan D Pathak; Owen C Pearson; Ralph B Puchalski; Zackery L Riley; Hannah R Rockett; Stephen A Rowland; Joshua J Royall; Marcos J Ruiz; Nadia R Sarno; Katherine Schaffnit; Nadiya V Shapovalova; Taz Sivisay; Clifford R Slaughterbeck; Simon C Smith; Kimberly A Smith; Bryan I Smith; Andy J Sodt; Nick N Stewart; Kenda-Ruth Stumpf; Susan M Sunkin; Madhavi Sutram; Angelene Tam; Carey D Teemer; Christina Thaller; Carol L Thompson; Lee R Varnam; Axel Visel; Ray M Whitlock; Paul E Wohnoutka; Crissa K Wolkey; Victoria Y Wong; Matthew Wood; Murat B Yaylaoglu; Rob C Young; Brian L Youngstrom; Xu Feng Yuan; Bin Zhang; Theresa A Zwingman; Allan R Jones
Journal:  Nature       Date:  2006-12-06       Impact factor: 49.962

5.  High-density mapping of single-molecule trajectories with photoactivated localization microscopy.

Authors:  Suliana Manley; Jennifer M Gillette; George H Patterson; Hari Shroff; Harald F Hess; Eric Betzig; Jennifer Lippincott-Schwartz
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

Review 6.  Distributed hierarchical processing in the primate cerebral cortex.

Authors:  D J Felleman; D C Van Essen
Journal:  Cereb Cortex       Date:  1991 Jan-Feb       Impact factor: 5.357

7.  The posterior nervous system of the nematode Caenorhabditis elegans: serial reconstruction of identified neurons and complete pattern of synaptic interactions.

Authors:  D H Hall; R L Russell
Journal:  J Neurosci       Date:  1991-01       Impact factor: 6.167

8.  Proposal to sequence the human genome stirs debate.

Authors:  R Lewin
Journal:  Science       Date:  1986-06-27       Impact factor: 47.728

9.  DNA sequencing: bench to bedside and beyond.

Authors:  Clyde A Hutchison
Journal:  Nucleic Acids Res       Date:  2007-09-12       Impact factor: 16.971

10.  Evolution of genes and genomes on the Drosophila phylogeny.

Authors:  Andrew G Clark; Michael B Eisen; Douglas R Smith; Casey M Bergman; Brian Oliver; Therese A Markow; Thomas C Kaufman; Manolis Kellis; William Gelbart; Venky N Iyer; Daniel A Pollard; Timothy B Sackton; Amanda M Larracuente; Nadia D Singh; Jose P Abad; Dawn N Abt; Boris Adryan; Montserrat Aguade; Hiroshi Akashi; Wyatt W Anderson; Charles F Aquadro; David H Ardell; Roman Arguello; Carlo G Artieri; Daniel A Barbash; Daniel Barker; Paolo Barsanti; Phil Batterham; Serafim Batzoglou; Dave Begun; Arjun Bhutkar; Enrico Blanco; Stephanie A Bosak; Robert K Bradley; Adrianne D Brand; Michael R Brent; Angela N Brooks; Randall H Brown; Roger K Butlin; Corrado Caggese; Brian R Calvi; A Bernardo de Carvalho; Anat Caspi; Sergio Castrezana; Susan E Celniker; Jean L Chang; Charles Chapple; Sourav Chatterji; Asif Chinwalla; Alberto Civetta; Sandra W Clifton; Josep M Comeron; James C Costello; Jerry A Coyne; Jennifer Daub; Robert G David; Arthur L Delcher; Kim Delehaunty; Chuong B Do; Heather Ebling; Kevin Edwards; Thomas Eickbush; Jay D Evans; Alan Filipski; Sven Findeiss; Eva Freyhult; Lucinda Fulton; Robert Fulton; Ana C L Garcia; Anastasia Gardiner; David A Garfield; Barry E Garvin; Greg Gibson; Don Gilbert; Sante Gnerre; Jennifer Godfrey; Robert Good; Valer Gotea; Brenton Gravely; Anthony J Greenberg; Sam Griffiths-Jones; Samuel Gross; Roderic Guigo; Erik A Gustafson; Wilfried Haerty; Matthew W Hahn; Daniel L Halligan; Aaron L Halpern; Gillian M Halter; Mira V Han; Andreas Heger; LaDeana Hillier; Angie S Hinrichs; Ian Holmes; Roger A Hoskins; Melissa J Hubisz; Dan Hultmark; Melanie A Huntley; David B Jaffe; Santosh Jagadeeshan; William R Jeck; Justin Johnson; Corbin D Jones; William C Jordan; Gary H Karpen; Eiko Kataoka; Peter D Keightley; Pouya Kheradpour; Ewen F Kirkness; Leonardo B Koerich; Karsten Kristiansen; Dave Kudrna; Rob J Kulathinal; Sudhir Kumar; Roberta Kwok; Eric Lander; Charles H Langley; Richard Lapoint; Brian P Lazzaro; So-Jeong Lee; Lisa Levesque; Ruiqiang Li; Chiao-Feng Lin; Michael F Lin; Kerstin Lindblad-Toh; Ana Llopart; Manyuan Long; Lloyd Low; Elena Lozovsky; Jian Lu; Meizhong Luo; Carlos A Machado; Wojciech Makalowski; Mar Marzo; Muneo Matsuda; Luciano Matzkin; Bryant McAllister; Carolyn S McBride; Brendan McKernan; Kevin McKernan; Maria Mendez-Lago; Patrick Minx; Michael U Mollenhauer; Kristi Montooth; Stephen M Mount; Xu Mu; Eugene Myers; Barbara Negre; Stuart Newfeld; Rasmus Nielsen; Mohamed A F Noor; Patrick O'Grady; Lior Pachter; Montserrat Papaceit; Matthew J Parisi; Michael Parisi; Leopold Parts; Jakob S Pedersen; Graziano Pesole; Adam M Phillippy; Chris P Ponting; Mihai Pop; Damiano Porcelli; Jeffrey R Powell; Sonja Prohaska; Kim Pruitt; Marta Puig; Hadi Quesneville; Kristipati Ravi Ram; David Rand; Matthew D Rasmussen; Laura K Reed; Robert Reenan; Amy Reily; Karin A Remington; Tania T Rieger; Michael G Ritchie; Charles Robin; Yu-Hui Rogers; Claudia Rohde; Julio Rozas; Marc J Rubenfield; Alfredo Ruiz; Susan Russo; Steven L Salzberg; Alejandro Sanchez-Gracia; David J Saranga; Hajime Sato; Stephen W Schaeffer; Michael C Schatz; Todd Schlenke; Russell Schwartz; Carmen Segarra; Rama S Singh; Laura Sirot; Marina Sirota; Nicholas B Sisneros; Chris D Smith; Temple F Smith; John Spieth; Deborah E Stage; Alexander Stark; Wolfgang Stephan; Robert L Strausberg; Sebastian Strempel; David Sturgill; Granger Sutton; Granger G Sutton; Wei Tao; Sarah Teichmann; Yoshiko N Tobari; Yoshihiko Tomimura; Jason M Tsolas; Vera L S Valente; Eli Venter; J Craig Venter; Saverio Vicario; Filipe G Vieira; Albert J Vilella; Alfredo Villasante; Brian Walenz; Jun Wang; Marvin Wasserman; Thomas Watts; Derek Wilson; Richard K Wilson; Rod A Wing; Mariana F Wolfner; Alex Wong; Gane Ka-Shu Wong; Chung-I Wu; Gabriel Wu; Daisuke Yamamoto; Hsiao-Pei Yang; Shiaw-Pyng Yang; James A Yorke; Kiyohito Yoshida; Evgeny Zdobnov; Peili Zhang; Yu Zhang; Aleksey V Zimin; Jennifer Baldwin; Amr Abdouelleil; Jamal Abdulkadir; Adal Abebe; Brikti Abera; Justin Abreu; St Christophe Acer; Lynne Aftuck; Allen Alexander; Peter An; Erica Anderson; Scott Anderson; Harindra Arachi; Marc Azer; Pasang Bachantsang; Andrew Barry; Tashi Bayul; Aaron Berlin; Daniel Bessette; Toby Bloom; Jason Blye; Leonid Boguslavskiy; Claude Bonnet; Boris Boukhgalter; Imane Bourzgui; Adam Brown; Patrick Cahill; Sheridon Channer; Yama Cheshatsang; Lisa Chuda; Mieke Citroen; Alville Collymore; Patrick Cooke; Maura Costello; Katie D'Aco; Riza Daza; Georgius De Haan; Stuart DeGray; Christina DeMaso; Norbu Dhargay; Kimberly Dooley; Erin Dooley; Missole Doricent; Passang Dorje; Kunsang Dorjee; Alan Dupes; Richard Elong; Jill Falk; Abderrahim Farina; Susan Faro; Diallo Ferguson; Sheila Fisher; Chelsea D Foley; Alicia Franke; Dennis Friedrich; Loryn Gadbois; Gary Gearin; Christina R Gearin; Georgia Giannoukos; Tina Goode; Joseph Graham; Edward Grandbois; Sharleen Grewal; Kunsang Gyaltsen; Nabil Hafez; Birhane Hagos; Jennifer Hall; Charlotte Henson; Andrew Hollinger; Tracey Honan; Monika D Huard; Leanne Hughes; Brian Hurhula; M Erii Husby; Asha Kamat; Ben Kanga; Seva Kashin; Dmitry Khazanovich; Peter Kisner; Krista Lance; Marcia Lara; William Lee; Niall Lennon; Frances Letendre; Rosie LeVine; Alex Lipovsky; Xiaohong Liu; Jinlei Liu; Shangtao Liu; Tashi Lokyitsang; Yeshi Lokyitsang; Rakela Lubonja; Annie Lui; Pen MacDonald; Vasilia Magnisalis; Kebede Maru; Charles Matthews; William McCusker; Susan McDonough; Teena Mehta; James Meldrim; Louis Meneus; Oana Mihai; Atanas Mihalev; Tanya Mihova; Rachel Mittelman; Valentine Mlenga; Anna Montmayeur; Leonidas Mulrain; Adam Navidi; Jerome Naylor; Tamrat Negash; Thu Nguyen; Nga Nguyen; Robert Nicol; Choe Norbu; Nyima Norbu; Nathaniel Novod; Barry O'Neill; Sahal Osman; Eva Markiewicz; Otero L Oyono; Christopher Patti; Pema Phunkhang; Fritz Pierre; Margaret Priest; Sujaa Raghuraman; Filip Rege; Rebecca Reyes; Cecil Rise; Peter Rogov; Keenan Ross; Elizabeth Ryan; Sampath Settipalli; Terry Shea; Ngawang Sherpa; Lu Shi; Diana Shih; Todd Sparrow; Jessica Spaulding; John Stalker; Nicole Stange-Thomann; Sharon Stavropoulos; Catherine Stone; Christopher Strader; Senait Tesfaye; Talene Thomson; Yama Thoulutsang; Dawa Thoulutsang; Kerri Topham; Ira Topping; Tsamla Tsamla; Helen Vassiliev; Andy Vo; Tsering Wangchuk; Tsering Wangdi; Michael Weiand; Jane Wilkinson; Adam Wilson; Shailendra Yadav; Geneva Young; Qing Yu; Lisa Zembek; Danni Zhong; Andrew Zimmer; Zac Zwirko; David B Jaffe; Pablo Alvarez; Will Brockman; Jonathan Butler; CheeWhye Chin; Sante Gnerre; Manfred Grabherr; Michael Kleber; Evan Mauceli; Iain MacCallum
Journal:  Nature       Date:  2007-11-08       Impact factor: 49.962

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  81 in total

1.  Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury.

Authors:  Ali Ertürk; Christoph P Mauch; Farida Hellal; Friedrich Förstner; Tara Keck; Klaus Becker; Nina Jährling; Heinz Steffens; Melanie Richter; Mark Hübener; Edgar Kramer; Frank Kirchhoff; Hans Ulrich Dodt; Frank Bradke
Journal:  Nat Med       Date:  2011-12-25       Impact factor: 53.440

Review 2.  Neurophysiological and computational principles of cortical rhythms in cognition.

Authors:  Xiao-Jing Wang
Journal:  Physiol Rev       Date:  2010-07       Impact factor: 37.312

Review 3.  Neuronal network analyses: premises, promises and uncertainties.

Authors:  David Parker
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-12       Impact factor: 6.237

4.  Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture.

Authors:  Larry W Swanson; Mihail Bota
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

5.  Synaptic circuits and their variations within different columns in the visual system of Drosophila.

Authors:  Shin-ya Takemura; C Shan Xu; Zhiyuan Lu; Patricia K Rivlin; Toufiq Parag; Donald J Olbris; Stephen Plaza; Ting Zhao; William T Katz; Lowell Umayam; Charlotte Weaver; Harald F Hess; Jane Anne Horne; Juan Nunez-Iglesias; Roxanne Aniceto; Lei-Ann Chang; Shirley Lauchie; Ashley Nasca; Omotara Ogundeyi; Christopher Sigmund; Satoko Takemura; Julie Tran; Carlie Langille; Kelsey Le Lacheur; Sari McLin; Aya Shinomiya; Dmitri B Chklovskii; Ian A Meinertzhagen; Louis K Scheffer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

6.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

Review 7.  Neuronal identity: the neuron types of a simple chordate sibling, the tadpole larva of Ciona intestinalis.

Authors:  Kerrianne Ryan; Ian A Meinertzhagen
Journal:  Curr Opin Neurobiol       Date:  2018-12-06       Impact factor: 6.627

Review 8.  Neuronal tracing for connectomic studies.

Authors:  Ju Lu
Journal:  Neuroinformatics       Date:  2011-09

9.  Seeing circuits assemble.

Authors:  Jeff W Lichtman; Stephen J Smith
Journal:  Neuron       Date:  2008-11-06       Impact factor: 17.173

Review 10.  From functional architecture to functional connectomics.

Authors:  R Clay Reid
Journal:  Neuron       Date:  2012-07-26       Impact factor: 17.173

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