Literature DB >> 18791222

Idaten is a new cold-inducible transposon of Volvox carteri that can be used for tagging developmentally important genes.

Noriko Ueki1, Ichiro Nishii.   

Abstract

A cold-inducible transposon called Jordan has previously been used to tag and recover genes controlling key aspects of Volvox development, including the process called inversion. In a search for additional genes, we isolated 17 new inversionless mutants from cultures grown at 24 degrees (the temperature that activates Jordan transposition). These mutants were stable at 32 degrees, but generated revertants at 24 degrees . DNA blots revealed that one mutant had a transposon unrelated to Jordan inserted in invA ("inversionless A"). This new transposon, which we named Idaten, has terminal inverted repeats (TIRs) beginning with CCCTA, and upon insertion it creates a 3-bp target-site duplication. It appears to belong to the CACTA superfamily of class II DNA transposons, which includes En/Spm. No significant open reading frames were in the Idaten sequence, but we retrieved another element with Idaten-type TIRs encoding a protein similar to the En/Spm transposase as a candidate for an Idaten-specific transposase. We found that in five of the new inversionless strains we could not find any Jordan insertions causing the phenotype to possess insertions of an Idaten family member in a single locus (invC). This clearly indicates that Idaten is a potentially powerful alternative to Jordan for tagging developmentally important genes in Volvox.

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Year:  2008        PMID: 18791222      PMCID: PMC2581939          DOI: 10.1534/genetics.108.094672

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  30 in total

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Review 2.  Differentiation of germinal and somatic cells in Volvox carteri.

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3.  A kinesin, invA, plays an essential role in volvox morphogenesis.

Authors:  Ichiro Nishii; Satoshi Ogihara; David L Kirk
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

4.  A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.

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Journal:  Dev Cell       Date:  2004-07       Impact factor: 12.270

Review 5.  Transposable elements as tools for genomics and genetics in Drosophila.

Authors:  Edward Ryder; Steven Russell
Journal:  Brief Funct Genomic Proteomic       Date:  2003-04

6.  MUSCLE: multiple sequence alignment with high accuracy and high throughput.

Authors:  Robert C Edgar
Journal:  Nucleic Acids Res       Date:  2004-03-19       Impact factor: 16.971

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Authors:  David L Kirk
Journal:  Bioessays       Date:  2005-03       Impact factor: 4.345

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Authors:  D L Kirk; M M Kirk
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  16 in total

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Journal:  Plant Cell       Date:  2009-04-03       Impact factor: 11.277

Review 2.  Green algae and the origins of multicellularity in the plant kingdom.

Authors:  James G Umen
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-16       Impact factor: 10.005

3.  Photosynthetic characteristics of a multicellular green alga Volvox carteri in response to external CO2 levels possibly regulated by CCM1/CIA5 ortholog.

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Journal:  Photosynth Res       Date:  2011-01-21       Impact factor: 3.573

4.  Genomics of Volvocine Algae.

Authors:  James G Umen; Bradley J S C Olson
Journal:  Adv Bot Res       Date:  2012       Impact factor: 2.175

Review 5.  Volvox: A simple algal model for embryogenesis, morphogenesis and cellular differentiation.

Authors:  Gavriel Matt; James Umen
Journal:  Dev Biol       Date:  2016-07-19       Impact factor: 3.582

6.  Dynamic Changes in the Transcriptome and Methylome of Chlamydomonas reinhardtii throughout Its Life Cycle.

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Journal:  Plant Physiol       Date:  2015-10-08       Impact factor: 8.340

Review 7.  Evolution of reproductive development in the volvocine algae.

Authors:  Armin Hallmann
Journal:  Sex Plant Reprod       Date:  2010-12-21

8.  Transcriptional activity of transposable elements in maize.

Authors:  Carlos M Vicient
Journal:  BMC Genomics       Date:  2010-10-25       Impact factor: 3.969

9.  Cell-type specific photoreceptors and light signaling pathways in the multicellular green alga Volvox carteri and their potential role in cellular differentiation.

Authors:  Arash Kianianmomeni
Journal:  Plant Signal Behav       Date:  2015

10.  The inducible nitA promoter provides a powerful molecular switch for transgene expression in Volvox carteri.

Authors:  Eva Laura von der Heyde; Benjamin Klein; Lars Abram; Armin Hallmann
Journal:  BMC Biotechnol       Date:  2015-02-18       Impact factor: 2.563

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