Literature DB >> 18791008

Metagenomic screening for bleomycin resistance genes.

Toshio Mori1, Shiori Mizuta, Hikaru Suenaga, Kentaro Miyazaki.   

Abstract

A metagenomic library of activated sludge was screened for bleomycin resistance genes. Two genes were identified that differed greatly from each other, from the genes of bleomycin-producing actinomycetes, and from those of clinical isolates. Therefore, the nonclinical environment is a rich reservoir of new resistance elements, and metagenomics can be used to sample the resistome rapidly.

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Year:  2008        PMID： 18791008      PMCID： PMC2576686          DOI： 10.1128/AEM.00873-08

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  17 in total

Review 1.  Antibiotic resistance with particular reference to soil microorganisms.

Authors:  V C Nwosu
Journal:  Res Microbiol       Date:  2001-06       Impact factor: 3.992

2.  Uncultured soil bacteria are a reservoir of new antibiotic resistance genes.

Authors:  Christian S Riesenfeld; Robert M Goodman; Jo Handelsman
Journal:  Environ Microbiol       Date:  2004-09       Impact factor: 5.491

Review 3.  Metagenomics: application of genomics to uncultured microorganisms.

Authors:  Jo Handelsman
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

4.  Sampling the antibiotic resistome.

Authors:  Vanessa M D'Costa; Katherine M McGrann; Donald W Hughes; Gerard D Wright
Journal:  Science       Date:  2006-01-20       Impact factor: 47.728

Review 5.  Expanding the soil antibiotic resistome: exploring environmental diversity.

Authors:  Vanessa M D'Costa; Emma Griffiths; Gerard D Wright
Journal:  Curr Opin Microbiol       Date:  2007-10-22       Impact factor: 7.934

6.  Functional screening of a metagenomic library for genes involved in microbial degradation of aromatic compounds.

Authors:  Hikaru Suenaga; Tsutomu Ohnuki; Kentaro Miyazaki
Journal:  Environ Microbiol       Date:  2007-09       Impact factor: 5.491

7.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

8.  TreeView: an application to display phylogenetic trees on personal computers.

Authors:  R D Page
Journal:  Comput Appl Biosci       Date:  1996-08

9.  The tallysomycin biosynthetic gene cluster from Streptoalloteichus hindustanus E465-94 ATCC 31158 unveiling new insights into the biosynthesis of the bleomycin family of antitumor antibiotics.

Authors:  Meifeng Tao; Liyan Wang; Evelyn Wendt-Pienkowski; Nicholas P George; Ute Galm; Guodong Zhang; Jane M Coughlin; Ben Shen
Journal:  Mol Biosyst       Date:  2006-11-28

Review 10.  Cloning and characterization of the bleomycin biosynthetic gene cluster from Streptomyces verticillus ATCC15003.

Authors:  Ben Shen; Liangcheng Du; Cesar Sanchez; Daniel J Edwards; Mei Chen; Jeffrey M Murrell
Journal:  J Nat Prod       Date:  2002-03       Impact factor: 4.050
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  19 in total

1.  Metagenomics: Facts and Artifacts, and Computational Challenges*

Authors:  John C Wooley; Yuzhen Ye
Journal:  J Comput Sci Technol       Date:  2009-01       Impact factor: 1.571

2.  Crystallization and preliminary X-ray diffraction analysis of a putative two-domain-type laccase from a metagenome.

Authors:  Hirofumi Komori; Kentaro Miyazaki; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-02-26

3.  Insights into resistome and stress responses genes in Bubalus bubalis rumen through metagenomic analysis.

Authors:  Bhaskar Reddy; Krishna M Singh; Amrutlal K Patel; Ancy Antony; Harshad J Panchasara; Chaitanya G Joshi
Journal:  Mol Biol Rep       Date:  2014-07-02       Impact factor: 2.316

4.  Characterization of BRPMBL, the Bleomycin Resistance Protein Associated with the Carbapenemase NDM.

Authors:  Laurent Dortet; Delphine Girlich; Anne-Laure Virlouvet; Laurent Poirel; Patrice Nordmann; Bogdan I Iorga; Thierry Naas
Journal:  Antimicrob Agents Chemother       Date:  2017-02-23       Impact factor: 5.191

5.  Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology.

Authors:  Molly K Gibson; Kevin J Forsberg; Gautam Dantas
Journal:  ISME J       Date:  2014-07-08       Impact factor: 10.302

6.  Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses.

Authors:  François Enault; Arnaud Briet; Léa Bouteille; Simon Roux; Matthew B Sullivan; Marie-Agnès Petit
Journal:  ISME J       Date:  2016-06-21       Impact factor: 10.302

7.  Association of the emerging carbapenemase NDM-1 with a bleomycin resistance protein in Enterobacteriaceae and Acinetobacter baumannii.

Authors:  Laurent Dortet; Patrice Nordmann; Laurent Poirel
Journal:  Antimicrob Agents Chemother       Date:  2012-01-30       Impact factor: 5.191

Review 8.  The role of natural environments in the evolution of resistance traits in pathogenic bacteria.

Authors:  Jose L Martinez
Journal:  Proc Biol Sci       Date:  2009-04-08       Impact factor: 5.349

9.  Marine integrons containing novel integrase genes, attachment sites, attI, and associated gene cassettes in polluted sediments from Suez and Tokyo Bays.

Authors:  Hosam Elsaied; Hatch W Stokes; Keiko Kitamura; Yasurou Kurusu; Yoichi Kamagata; Akihiko Maruyama
Journal:  ISME J       Date:  2011-01-20       Impact factor: 10.302

10.  Novel resistance functions uncovered using functional metagenomic investigations of resistance reservoirs.

Authors:  Erica C Pehrsson; Kevin J Forsberg; Molly K Gibson; Sara Ahmadi; Gautam Dantas
Journal:  Front Microbiol       Date:  2013-06-07       Impact factor: 5.640
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